View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10948_high_4 (Length: 224)
Name: NF10948_high_4
Description: NF10948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10948_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 40207240 - 40207048
Alignment:
| Q |
17 |
gatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgttgtgtgtatgtgctgcccttttgggcactcttgcttataacaatattag |
116 |
Q |
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| T |
40207240 |
gatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgttgtgtgtatgtgctgcccttttgggcactcttgcttataacaatattag |
40207141 |
T |
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| Q |
117 |
atgatttgaataaacgtgtgtctagtttatgcaatgaaggaagatggtgtcgaatgtgggctatatatataagggagaataaacacatacaattt |
211 |
Q |
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| T |
40207140 |
atgatttgaataaacgtgtgtctagtttatgtaatgaaggaagatggtgtcgaacgtgggctata--tataagggagaataaacacataccattt |
40207048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 40203086 - 40202916
Alignment:
| Q |
17 |
gatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgttgtgtgtatgtgctgcccttttgggcactcttgcttataacaatattag |
116 |
Q |
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||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||| | || |||||||||| |||||||||||||||| ||||| |
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| T |
40203086 |
gatgttggatgtcaaagagaggaaaggaagagacacaaagagggtgttgtgtgtgtgtgtctgttgcccttttgagcactcttgcttataa---tattaa |
40202990 |
T |
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| Q |
117 |
atgatttgaataaacgtgt---gt--ctagtttatgcaatgaaggaagatggtgtcgaatgtgggctatatata |
185 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
40202989 |
atgagttgaataaacgtgttgtgtaactagtttatgcaatgaaggaagatggtgttgaacgtggggtatatata |
40202916 |
T |
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