View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10948_low_1 (Length: 399)
Name: NF10948_low_1
Description: NF10948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10948_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 26425218 - 26425575
Alignment:
| Q |
24 |
aataaaaagaaattaacaaaatctcatagtattcaatattagagatcctctaaatgtttacttctagtacactttatagttttctttctttagagaaggt |
123 |
Q |
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| T |
26425218 |
aataaaaagaaattaacaaaatctcatagtattcaatattagagatcctctaaatgtttacttctagtacactttatagttttctttctttagagaaggt |
26425317 |
T |
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| Q |
124 |
taagtgatcaaattcttggagaaacaaaaaatatgaaagcaaataatagtttgcatgaatttgcaatcttattttacttgttgaaaatgaataacccctt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
26425318 |
taagtgatcaaattcttggagaaacaaaaaatatgaaagcaaataatagtttgcatgaacttgcaatcttattttacttgttgaaaatgaataaaccctt |
26425417 |
T |
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| Q |
224 |
cttcactacttccacctaaccttgaattttgacaaaatccaaaagatatcaaaatgatatacttcttctttcttgcaatacaccacattcacctaatnnn |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26425418 |
cttcactacttccacctaaccttgaattttgacaaaatccaaaagatatcaaaatgatatacttcttctttcttgcaatacaccacattcacctaat-aa |
26425516 |
T |
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| Q |
324 |
nnnnnctactttacttgcatattttagcttccttttaaactcctataaatgatgaaaaa |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26425517 |
aaaaactactttacttgcatattttagcttccttttaaactcctataaatgatgaaaaa |
26425575 |
T |
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