View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10948_low_3 (Length: 366)
Name: NF10948_low_3
Description: NF10948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10948_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 40207388 - 40207048
Alignment:
| Q |
11 |
cagagatgtactagtttagagtggttaattaataatgatttactacgaggcagaaacatgtaagaacgtttaattcatgcaaaagctcnnnnnnngtcaa |
110 |
Q |
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| T |
40207388 |
cagagatgtactagtttagagtggttaattaataatgatttactacgaggcagaaacatgtaagaacgtttaattcatgcaaaagctcaaaaaaagtcaa |
40207289 |
T |
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| Q |
111 |
caaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgtt |
210 |
Q |
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| T |
40207288 |
caaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgtt |
40207189 |
T |
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| Q |
211 |
gtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgtgtctagtttatgcaatgaaggaagatggtgtcg |
310 |
Q |
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| T |
40207188 |
gtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgtgtctagtttatgtaatgaaggaagatggtgtcg |
40207089 |
T |
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| Q |
311 |
aatgtgggctatatatataagggagaataaacacatacaattt |
353 |
Q |
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| T |
40207088 |
aacgtgggctata--tataagggagaataaacacataccattt |
40207048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 40203139 - 40202916
Alignment:
| Q |
106 |
gtcaacaaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgt |
205 |
Q |
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| T |
40203139 |
gtcaacaaaaactgatttaactataagagttagaaagtacaggcaaaaacagtgatgttggatgtcaaagagaggaaaggaagagacacaaagagggtgt |
40203040 |
T |
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| Q |
206 |
ttgttgtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgt---gt--ctagtttatgcaatgaaggaa |
300 |
Q |
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| T |
40203039 |
tgtgtgtgtgtgtctgttgcccttttgagcactcttgcttataa---tattaaatgagttgaataaacgtgttgtgtaactagtttatgcaatgaaggaa |
40202943 |
T |
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| Q |
301 |
gatggtgtcgaatgtgggctatatata |
327 |
Q |
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| T |
40202942 |
gatggtgttgaacgtggggtatatata |
40202916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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