View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10948_low_5 (Length: 259)
Name: NF10948_low_5
Description: NF10948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10948_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 41831997 - 41831764
Alignment:
| Q |
11 |
cagagatttgtagtactaaaaacaacatcaatattaataagaagaagcttagaaaaggtttgcggtcaccagaagaagatgagaaacttatgaactatat |
110 |
Q |
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| T |
41831997 |
cagagatttgtagtactaaaaacaacatcaatattaataagaagaagcttagaaaaggtttgtggtcaccagaagaagatgagaaacttatgaactatat |
41831898 |
T |
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| Q |
111 |
ggttaggaatggacaaggatgttggagtgatgtggcaagaaatgctggattggaaagatgtggcaaaagttgtaggctaagatggatcaattacttgagg |
210 |
Q |
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| T |
41831897 |
ggttaggaatggacaaggatgttggagtgatgtggcaagaaatgctggattggaaagatgtggcaaaagttgtaggctaagatggatcaattacttgagg |
41831798 |
T |
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| Q |
211 |
cctgatcttaaaagaggtgctttctcaacacaag |
244 |
Q |
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| T |
41831797 |
cctgatcttaaaagaggtgctttctcaacacaag |
41831764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 24359974 - 24359790
Alignment:
| Q |
58 |
cttagaaaaggtttgcggtcaccagaagaagatgagaaacttatgaactatatggttaggaatggacaaggatgttggagtgatgtggcaagaaatgctg |
157 |
Q |
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| T |
24359974 |
cttagaaaaggattgtggtcaccagaggaagatgagaagcttatgaactatatgttaaatagtggacaaggttgttggagtgatgttgctagaaatgctg |
24359875 |
T |
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| Q |
158 |
gattggaaagatgtggcaaaagttgtaggctaagatggatcaattacttgaggcctgatcttaaaagaggtgctttctcaacaca |
242 |
Q |
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| T |
24359874 |
gattgcaaagatgtggaaaaagttgtaggttaagatggatcaattacttgaggcctgatcttaaacgtggtgcattctcaccaca |
24359790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 37962866 - 37962939
Alignment:
| Q |
164 |
aaagatgtggcaaaagttgtaggctaagatggatcaattacttgaggcctgatcttaaaagaggtgctttctca |
237 |
Q |
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| T |
37962866 |
aaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaaagaggagcattctca |
37962939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 9231906 - 9232006
Alignment:
| Q |
121 |
ggacaaggatgttggagtgatgtggcaagaaatgctggattggaaagatgtggcaaaagttgtaggctaagatggatcaattacttgaggcctgatctta |
220 |
Q |
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| T |
9231906 |
ggacaaggttgttggagtgacattgctaggaatgctggtcttcaaagatgtggcaaaagttgtcgtcttcgttggattaattacttgagacctgatctta |
9232005 |
T |
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| Q |
221 |
a |
221 |
Q |
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| T |
9232006 |
a |
9232006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 33695348 - 33695409
Alignment:
| Q |
166 |
agatgtggcaaaagttgtaggctaagatggatcaattacttgaggcctgatcttaaaagagg |
227 |
Q |
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| T |
33695348 |
agatgtggaaagagttgtaggctaaggtggaccaattatttaaggcctgatattaagagagg |
33695409 |
T |
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