View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_high_10 (Length: 434)
Name: NF10949_high_10
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 4491481 - 4491886
Alignment:
| Q |
17 |
accttggtgaatttcgacgacgtacaccttgtatcacacttccaccataagttgcagcattatttaaaggcatgagatttccaatgtataggactgtacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4491481 |
accttggtgaatttcgacgacgtacaccttgtattacacttccaccataagttgctgcattatttaaaggcatgagatttccaatgtataggcctgtacc |
4491580 |
T |
|
| Q |
117 |
atttctaaatgctcctgtcaaatctttgttattatcatcatcagattcggagattacgtttccttgaggaagctgatgattgttatcaacattagattcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4491581 |
atttctaaatgctcctgtcaaatctttgttattatcatcatcagattcggagattacgtttccttgaggaagctgatgattgttatcaacattagattcg |
4491680 |
T |
|
| Q |
217 |
gcgattacatttccttgagtaagttggtgattattatcaacattaggttctgtgattacatttccctgagaaagttgaggagcttgctcttcgcagttgt |
316 |
Q |
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| T |
4491681 |
gtgattacatttccttgagtaagttggtgattattatcaacattaggttctgtgattacatttccctgagaaagttgatgagcttgctcttcgcagttgt |
4491780 |
T |
|
| Q |
317 |
tatggttatagaagtacttctgtaataaagctagtactaagcagattgtggaagtggtagcacatatgaaatagagtccccaaaatttgtcaagggtaag |
416 |
Q |
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| T |
4491781 |
tatggttatagaagtacttctgtaataaagctagtaataagcagattgtggaagtggtagcacatatgaaatagagtccccaaaatttgtcaagggtaag |
4491880 |
T |
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| Q |
417 |
gctctc |
422 |
Q |
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|||||| |
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| T |
4491881 |
gctctc |
4491886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 4497160 - 4497565
Alignment:
| Q |
17 |
accttggtgaatttcgacgacgtacaccttgtatcacacttccaccataagttgcagcattatttaaaggcatgagatttccaatgtataggactgtacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
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| T |
4497160 |
accttggtgaatttcgacgacgtacaccttgtattacaattccaccataagttgcagcgttatttaaaggcatgagatttccaatgtataagcctgtacc |
4497259 |
T |
|
| Q |
117 |
atttctaaatgctcctgtcaaatctttgttattatcatcatcagattcggagattacgtttccttgaggaagctgatgattgttatcaacattagattcg |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4497260 |
atttctagatgctcctgtcaaatctttgttattatcatcatcagattcggagattacgtttccttgaggaagttgatgattgttatcaacattagattcg |
4497359 |
T |
|
| Q |
217 |
gcgattacatttccttgagtaagttggtgattattatcaacattaggttctgtgattacatttccctgagaaagttgaggagcttgctcttcgcagttgt |
316 |
Q |
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| T |
4497360 |
gcgattacatttccttgagtaagttggtgattattatcaacattaggttcagagattacatttccttgagaaagttggtgagcttcctcttcacaattgt |
4497459 |
T |
|
| Q |
317 |
tatggttatagaagtacttctgtaataaagctagtactaagcagattgtggaagtggtagcacatatgaaatagagtccccaaaatttgtcaagggtaag |
416 |
Q |
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| T |
4497460 |
tatggttatggaagtacttctgtaataaagctagtaataagcagattgtggaagtggtagcacatatgaaatagagtacccaaaatttgtcaagggtaag |
4497559 |
T |
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| Q |
417 |
gctctc |
422 |
Q |
| |
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|||||| |
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| T |
4497560 |
gctctc |
4497565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 422
Target Start/End: Original strand, 4503994 - 4504142
Alignment:
| Q |
271 |
attacatttccctgagaaagttgaggagcttgctcttcgcagttgttatggttatagaagtacttctgtaataaagctagtactaagcagattgtggaag |
370 |
Q |
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||||||||||| |||| |||||||| ||||||| || ||| |||||||||| ||| || ||| ||||||||||||| || |||||| ||||||| |
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| T |
4503994 |
attacatttccttgaggaagttgag---cttgctcatcatagtgattatggttatggaaatatttcctcaataaagctagtaatatgcagatggtggaag |
4504090 |
T |
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| Q |
371 |
tggtagcacatatgaaatagagtccccaaaatttgtcaagggtaaggctctc |
422 |
Q |
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||| ||||||||||| ||| |||||| | |||||| ||||||| || ||||| |
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| T |
4504091 |
tggcagcacatatgatatatagtcccaagaatttggcaagggtcagactctc |
4504142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 4503837 - 4504013
Alignment:
| Q |
18 |
ccttggtgaatttcgacgacgtacaccttgtatcacacttccaccataagttgcagcattatttaaaggc---atgagatttccaatgtataggactgta |
114 |
Q |
| |
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|||||||||||||||| |||||| |||||||| ||| ||||||| ||| ||||| |||||||| | | |||||||| ||| |||| ||| ||||| |
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| T |
4503837 |
ccttggtgaatttcgatgacgtataccttgtaatacagatccaccaaaagaggcagctttatttaatgtcatgatgagattcccattgtacaggcctgta |
4503936 |
T |
|
| Q |
115 |
ccatttctaaatgctcctgtcaaatctttgttatta---tcatcatcagattcggagattacgtttccttgaggaag |
188 |
Q |
| |
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| T |
4503937 |
ccatttctaattgatctcttcatgtcattgttattattttcatcatcagattcggcaattacatttccttgaggaag |
4504013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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