View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10949_high_13 (Length: 378)
Name: NF10949_high_13
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_high_13 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 29623332 - 29622972
Alignment:
| Q |
1 |
tgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623332 |
tgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggct |
29623233 |
T |
|
| Q |
101 |
attgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623232 |
attgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagaca |
29623133 |
T |
|
| Q |
201 |
ttgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623132 |
ttgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatga |
29623033 |
T |
|
| Q |
301 |
tgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29623032 |
tgacattgtagcccacttgggagactttggattagctaggctcattaatggatcctcaaac |
29622972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 35754819 - 35755151
Alignment:
| Q |
20 |
ggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgc |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35754819 |
ggaaagatgaagcaccggaatcttgtcaagattttaacttgttgttcaagtgttgattataatggtgaagatttcaaagctattgtttttgagttcatgt |
35754918 |
T |
|
| Q |
120 |
ctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctca |
219 |
Q |
| |
|
| ||| |||||| |||||| ||||||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35754919 |
caaatgggagtcttgaaaagttgttgcacgataatgaagggtcaggaaattttaatctcaacctcacacaaaggttagacattgctcttgatgtagctca |
35755018 |
T |
|
| Q |
220 |
tgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35755019 |
tgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaatgttcttcttgatgatgaaattgtagcccacttg |
35755118 |
T |
|
| Q |
320 |
ggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
35755119 |
ggagactttggcctagctaggctcattcatgga |
35755151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 35385999 - 35386349
Alignment:
| Q |
2 |
gcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggcta |
101 |
Q |
| |
|
|||||||| || |||| ||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35385999 |
gcagaatgcaatgctctgggaaagatgaagcaccagaatcttgtcaaggtcctaacctgttgttcaagtgttgattataagggtgaagatttcaaggcta |
35386098 |
T |
|
| Q |
102 |
ttgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacat |
201 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |||||| | |||||| |||||||||| |||| || |||||||||||||||||| ||||| ||||||| |
|
|
| T |
35386099 |
ttgtttttgagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagggtctgaaaatcataatctcaacctcacataaaggttagacat |
35386198 |
T |
|
| Q |
202 |
tgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgat |
301 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
35386199 |
tgctcttgatgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatcttaagccaagcaacgttcttcttgacgat |
35386298 |
T |
|
| Q |
302 |
gacattgtagcccacttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||| ||||||||||||||||||||||||| || |||||| |||||| |||| |
|
|
| T |
35386299 |
gactttgtagcccacttgggagactttggcttggctaggatcattcttgga |
35386349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 35410679 - 35411010
Alignment:
| Q |
21 |
gaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcc |
120 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35410679 |
gaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgttcaagtgttgattataatggtgaagagttcaaggctattgtttttgagttaatgcc |
35410778 |
T |
|
| Q |
121 |
taatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctcat |
220 |
Q |
| |
|
|||| || |||||||||| | ||||| ||||| ||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35410779 |
taatgggaatctagaaaagtttttgcatgataacgaagggtctgaaaatcataatctcaacctcacacaaaggttagacattgctcttgatgtagctcat |
35410878 |
T |
|
| Q |
221 |
gcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttgg |
320 |
Q |
| |
|
||| | ||||||||||||||||| | ||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35410879 |
gcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgttcttcttgacgatgactttgtagcccacttgg |
35410978 |
T |
|
| Q |
321 |
gagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| |
|
|
| T |
35410979 |
gagactttggcttggctaggctcattcttgga |
35411010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 35366847 - 35367197
Alignment:
| Q |
2 |
gcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggcta |
101 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
35366847 |
gcagaatgtgaagctctaggaaagatgaagcaccgaaatcttgtcaagatcctaacttgttgttcaagcattgattataagggtgaagagttcaaggcta |
35366946 |
T |
|
| Q |
102 |
ttgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacat |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||| ||||| ||||| ||||||| |||||||||| ||||| ||| || | ||||| |
|
|
| T |
35366947 |
ttgtttttgagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagggtctggaaatcataatctcagcctcagacacagagttgacat |
35367046 |
T |
|
| Q |
202 |
tgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgat |
301 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| || ||| || | |||||||||||||| ||||||| ||||| |||||||| || ||| |
|
|
| T |
35367047 |
tgctcttgatgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgttcttctggacgat |
35367146 |
T |
|
| Q |
302 |
gacattgtagcccacttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
35367147 |
gacactgtagcccacttgggagactttggcttagctaggctcattcttgga |
35367197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35376409 - 35376737
Alignment:
| Q |
18 |
taggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcat |
117 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
35376409 |
taggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattgtttttgagttcat |
35376508 |
T |
|
| Q |
118 |
gcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tctggaagccataatctcaacctcacacaaaggatagacattgctcttgat |
211 |
Q |
| |
|
||||| | || ||| ||||| ||||||| | ||| |||| || ||| ||| | |||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
35376509 |
gcctagtgggaatctggaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttagacattgctctcgac |
35376608 |
T |
|
| Q |
212 |
gtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
35376609 |
gtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaagccaagcaatgttcttcttgatgatgacggtgtgg |
35376708 |
T |
|
| Q |
312 |
cccacttgggagactttggattagctagg |
340 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |
|
|
| T |
35376709 |
cccacttaggagactttggcttagctagg |
35376737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35423668 - 35423996
Alignment:
| Q |
18 |
taggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcat |
117 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
35423668 |
taggaaagatgaagcaccgtaatcttgtgaaaatcctaacttgctgttcaagtgttgattataatggtgaagattttaaggccattgtttttgagttcat |
35423767 |
T |
|
| Q |
118 |
gcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tctggaagccataatctcaacctcacacaaaggatagacattgctcttgat |
211 |
Q |
| |
|
||||| | || ||||||||| ||||||| | ||| |||| || ||| ||| | |||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
35423768 |
gcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttagacattgctctcgac |
35423867 |
T |
|
| Q |
212 |
gtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
35423868 |
gtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtga |
35423967 |
T |
|
| Q |
312 |
cccacttgggagactttggattagctagg |
340 |
Q |
| |
|
||||||| ||||||||||| |||||||| |
|
|
| T |
35423968 |
cccacttaggagactttggcgtagctagg |
35423996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 35370249 - 35370379
Alignment:
| Q |
18 |
taggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaaga-tttcaaggctattgtttttgagttca |
116 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
35370249 |
taggaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgctcaagtgttgattataatggtgaagagttccaaggctattgtttttgagttca |
35370348 |
T |
|
| Q |
117 |
tgcctaatatgagtctagaaaagatgttgca |
147 |
Q |
| |
|
|||| ||| |||| ||||||| |||||||| |
|
|
| T |
35370349 |
tgcccaatgggagtttagaaaacatgttgca |
35370379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 35437020 - 35437334
Alignment:
| Q |
22 |
aaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcct |
121 |
Q |
| |
|
||||||||||||| || ||| | ||| ||||||||| ||||||||| |||||||||| ||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
35437020 |
aaagatgaaacacaaaaaccttctgaagctcctaactttctgttcaagtattgattataatggtgaagttttcaaggctatagtttttgaattcatgcct |
35437119 |
T |
|
| Q |
122 |
aatatgagtctagaaaagatgttgcacgataatgaaggatctggaagcca-taatctcaacctcacacaaaggatagacattgctcttgatgtagctcat |
220 |
Q |
| |
|
| |||||||||| |||||||| |||||||| |||| || | | ||||| || |||| ||||||| || ||||||| |||||||| ||| |
|
|
| T |
35437120 |
atggggagtctagaaggcttgttgcacaataatgaa-catcttgagtctagaaatctaaatctcagacaaaggttaagtgttgctctcgatgtagcccat |
35437218 |
T |
|
| Q |
221 |
gcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttgg |
320 |
Q |
| |
|
|||||||||||||||||| || || | |||||||||||||||||||| |||||||||| ||||||||||| || ||||||||| | || |||| | |
|
|
| T |
35437219 |
gcattggattatcttcaccataattcccatgaagctgtagttcactgtgatattaagccaagtaatgttcttctcgacgatgacattattgcttacttag |
35437318 |
T |
|
| Q |
321 |
gagactttggattagc |
336 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
35437319 |
gagattttgggttagc |
35437334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 35388480 - 35388544
Alignment:
| Q |
224 |
ttggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt |
288 |
Q |
| |
|
|||||||||||||||||| || | || |||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
35388480 |
ttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaacaatgt |
35388544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10716947 - 10716902
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
10716947 |
ttcattgtgatcttaagccaagcaatgtccttcttgatgatgacat |
10716902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10747022 - 10746977
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
10747022 |
ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacat |
10746977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10740706 - 10740661
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
10740706 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacat |
10740661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10763140 - 10763095
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
10763140 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacat |
10763095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 10415874 - 10415540
Alignment:
| Q |
18 |
taggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcat |
117 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415874 |
taggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagatttcaaggctattgtttttgagttcat |
10415775 |
T |
|
| Q |
118 |
gcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagct |
217 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| ||||| ||||||| |||||||||| ||| |||||||| ||||||| ||||||||| ||||| |
|
|
| T |
10415774 |
gcctaaggggagtctggaaaagattctgcacgataacgaagggtctggaattcataatctcagcctggcacaaaggttagacatcgctcttgatctagct |
10415675 |
T |
|
| Q |
218 |
catgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccact |
317 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
10415674 |
catgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagtcaagcaacgttcttcttgacgatgacgttgtagcccact |
10415575 |
T |
|
| Q |
318 |
tgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10415574 |
tgggagactttggcttagctaggctcattcttgga |
10415540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 10420764 - 10420427
Alignment:
| Q |
15 |
ctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagtt |
114 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
10420764 |
ctctaggaaagatgaaacaccgaaaccttgtcaagatcctaacttgttgttcaagcgttgattataagggtgaagagttcaaggctattgtttttgagtt |
10420665 |
T |
|
| Q |
115 |
catgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgta |
214 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| ||||| ||||||| |||||||||| ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
10420664 |
catgcctaaggggagtctagaaaagcttctgcacgataaagaagggtctggaattcataatctcagcctcagacaaagggttgacattgctcttgatgta |
10420565 |
T |
|
| Q |
215 |
gctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagccc |
314 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||| ||||||| ||||| |||||||| || |||||||||||||| | |
|
|
| T |
10420564 |
gctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacattgtagctc |
10420465 |
T |
|
| Q |
315 |
acttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10420464 |
acttgggagactttggcttagctaggctcattcttgga |
10420427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 352
Target Start/End: Complemental strand, 10410196 - 10409843
Alignment:
| Q |
5 |
gaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
104 |
Q |
| |
|
||||| ||| |||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10410196 |
gaatgcaaagctctgggaaacatgaagcaccggaatcttgttaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
10410097 |
T |
|
| Q |
105 |
tttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaagga------tctggaagccataatctcaacctcacacaaaggataga |
198 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||| | ||||| | |||| ||| | ||| ||| | |||||||| ||||||||||| |||| |
|
|
| T |
10410096 |
tttttgagttcatgcctaatgggagtttggaaaaccttttgcatggtaataaagaacacgagtctagaaatctgaatctcaatttcacacaaaggttaga |
10409997 |
T |
|
| Q |
199 |
cattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgat |
298 |
Q |
| |
|
||||| ||| | |||||||||||||||||||||||||||| |||| ||| |||| || ||||| ||| ||||| ||||||||||||||||| ||| |
|
|
| T |
10409996 |
cattgttctcaacgtagctcatgcattggattatcttcacattgatgcagagcaagtggtggttcatagtggcgttaaaccaagcaatgttcttctcgat |
10409897 |
T |
|
| Q |
299 |
gatgacattgtagcccacttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
10409896 |
gatgacaatgtagctcacttaggagactttggcttagctaggctaattcgtgga |
10409843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 30663027 - 30663359
Alignment:
| Q |
20 |
ggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgc |
119 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
30663027 |
ggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacgagttcaaggctattgtttttgagttcatgc |
30663126 |
T |
|
| Q |
120 |
ctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctca |
219 |
Q |
| |
|
|||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
30663127 |
ctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttgatgtagctca |
30663226 |
T |
|
| Q |
220 |
tgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttg |
319 |
Q |
| |
|
||||||||||||||||||||||| || || | | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30663227 |
tgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttg |
30663326 |
T |
|
| Q |
320 |
ggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||||||||||||| || ||| | ||||||||| |
|
|
| T |
30663327 |
ggagactttggattggcaaggttaattcatgga |
30663359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 30671707 - 30672039
Alignment:
| Q |
20 |
ggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgc |
119 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
30671707 |
ggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacgagttcaaggctattgtttttgagttcatgc |
30671806 |
T |
|
| Q |
120 |
ctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctca |
219 |
Q |
| |
|
|||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
30671807 |
ctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttgatgtagctca |
30671906 |
T |
|
| Q |
220 |
tgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttg |
319 |
Q |
| |
|
||||||||||||||||||||||| || || | | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30671907 |
tgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttg |
30672006 |
T |
|
| Q |
320 |
ggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||||||||||||| || ||| | ||||||||| |
|
|
| T |
30672007 |
ggagactttggattggcaaggttaattcatgga |
30672039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 30626076 - 30626408
Alignment:
| Q |
20 |
ggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgc |
119 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || || ||||||||||| | |||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
30626076 |
ggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagaatagattataagggtgacgagttcaaggctattgtttttgagttcatgc |
30626175 |
T |
|
| Q |
120 |
ctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctca |
219 |
Q |
| |
|
|||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
30626176 |
ctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttgatgtagctca |
30626275 |
T |
|
| Q |
220 |
tgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttg |
319 |
Q |
| |
|
||||||||||||||||||||||| || || | | ||||||||| |||||||| || |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30626276 |
tgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttg |
30626375 |
T |
|
| Q |
320 |
ggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
|||||||||||||| || ||| | ||||||||| |
|
|
| T |
30626376 |
ggagactttggattggcaaggttaattcatgga |
30626408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 56 - 325
Target Start/End: Original strand, 1153787 - 1154056
Alignment:
| Q |
56 |
acttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatg |
155 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
1153787 |
acttgttgctcaagtattgattgcaaaggtgaagatttcaaggctattgtttttgagttcatgcctaacgggagtctagaaaagatgttgcatgatattg |
1153886 |
T |
|
| Q |
156 |
aaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagc |
255 |
Q |
| |
|
|||| |||| || || |||||||| |||||| ||||| |||| ||||||||||| ||||||||||| | |||| |||||||||||||| | | |||| |
|
|
| T |
1153887 |
aagggtctgaaaatcacaatctcaagctcacaaaaagggtagattttgctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagt |
1153986 |
T |
|
| Q |
256 |
tgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttgggagac |
325 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1153987 |
tacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgtagcccacttgggagac |
1154056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 13564620 - 13564895
Alignment:
| Q |
5 |
gaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
104 |
Q |
| |
|
||||| ||| || ||||||||||||| ||||| |||| ||| ||||| || ||| ||||||||| ||||| |||| ||||| |||||||||||||||| |
|
|
| T |
13564620 |
gaatgcaaagctttaggaaagatgaagcaccgaaatcgtgttaagattcttccttaatgttcaagtattgataataagggtgacgatttcaaggctattg |
13564719 |
T |
|
| Q |
105 |
tttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgc |
204 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| |||| |||||| ||| || ||| |||||| | | | |||||| | |||| |
|
|
| T |
13564720 |
tttttgagttcatgtctaatggtagtctagaaaagatgttgcacaataacgaaggaactgaaaatcattatctcagcttttctcaaagggtggaca---- |
13564815 |
T |
|
| Q |
205 |
tcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttctt |
292 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||| ||| ||| |||||||||||||| ||||| |||||| |
|
|
| T |
13564816 |
--------tagcttatgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt |
13564895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 15294046 - 15294086
Alignment:
| Q |
312 |
cccacttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
15294046 |
cccacttgggagactttggcttggctaggctcattcatgga |
15294086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 15474415 - 15474455
Alignment:
| Q |
312 |
cccacttgggagactttggattagctaggctcattcatgga |
352 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
15474415 |
cccacttgggagactttggcttggctaggctcattcatgga |
15474455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 7495 - 7540
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
7495 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacat |
7540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 12899772 - 12899817
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
12899772 |
ttcattgtgatataaagccaagcaatgtccttcttgatgatgacat |
12899817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 12958280 - 12958325
Alignment:
| Q |
261 |
ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat |
306 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| |||||| |
|
|
| T |
12958280 |
ttcactgtgatctaaagccaagcaatgtccttcttgatggtgacat |
12958325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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