View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10949_high_2 (Length: 576)

Name: NF10949_high_2
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10949_high_2
NF10949_high_2
[»] chr4 (14 HSPs)
chr4 (11-561)||(55994208-55994758)
chr4 (408-478)||(19422314-19422384)
chr4 (444-486)||(25487641-25487683)
chr4 (441-487)||(47970247-47970293)
chr4 (436-485)||(4191663-4191712)
chr4 (429-473)||(22684625-22684669)
chr4 (443-486)||(9680595-9680638)
chr4 (406-473)||(9843775-9843842)
chr4 (440-486)||(1404350-1404396)
chr4 (436-478)||(2980575-2980617)
chr4 (440-486)||(24936238-24936284)
chr4 (450-486)||(6364087-6364123)
chr4 (450-478)||(20521444-20521472)
chr4 (442-486)||(20907103-20907147)
[»] chr5 (11 HSPs)
chr5 (439-486)||(29588807-29588854)
chr5 (441-486)||(37063170-37063215)
chr5 (442-486)||(16945077-16945121)
chr5 (443-486)||(11054117-11054160)
chr5 (435-486)||(11684346-11684397)
chr5 (435-486)||(20982231-20982282)
chr5 (435-486)||(26516221-26516272)
chr5 (448-486)||(7096223-7096261)
chr5 (448-486)||(13224365-13224403)
chr5 (450-486)||(1773521-1773557)
chr5 (441-493)||(3951883-3951935)
[»] chr8 (12 HSPs)
chr8 (436-485)||(3645913-3645962)
chr8 (435-486)||(28769435-28769486)
chr8 (441-480)||(8536150-8536189)
chr8 (435-486)||(14482125-14482176)
chr8 (436-486)||(4558722-4558772)
chr8 (435-473)||(26716545-26716583)
chr8 (436-486)||(29699178-29699228)
chr8 (449-486)||(26215433-26215470)
chr8 (436-480)||(8629033-8629077)
chr8 (441-473)||(25869354-25869386)
chr8 (438-486)||(39866833-39866881)
chr8 (450-486)||(42597339-42597375)
[»] chr1 (14 HSPs)
chr1 (400-484)||(29046011-29046095)
chr1 (441-486)||(46499950-46499995)
chr1 (448-483)||(2462903-2462938)
chr1 (443-486)||(4549797-4549840)
chr1 (441-484)||(13037793-13037836)
chr1 (439-482)||(30043671-30043714)
chr1 (432-486)||(23895256-23895310)
chr1 (432-486)||(35080166-35080220)
chr1 (435-473)||(52013820-52013858)
chr1 (408-477)||(26179389-26179458)
chr1 (441-478)||(45107552-45107589)
chr1 (436-472)||(1255541-1255577)
chr1 (442-486)||(42397693-42397737)
chr1 (450-486)||(50319230-50319266)
[»] chr2 (12 HSPs)
chr2 (443-486)||(25609727-25609770)
chr2 (435-486)||(10150678-10150729)
chr2 (436-486)||(3102617-3102667)
chr2 (448-486)||(5133708-5133746)
chr2 (436-486)||(28810469-28810519)
chr2 (444-486)||(32098404-32098446)
chr2 (445-486)||(1899833-1899874)
chr2 (441-486)||(3673736-3673781)
chr2 (441-486)||(18179332-18179377)
chr2 (448-485)||(27237956-27237993)
chr2 (448-485)||(41033047-41033084)
chr2 (449-485)||(19977898-19977934)
[»] chr7 (14 HSPs)
chr7 (436-486)||(45593815-45593865)
chr7 (441-486)||(46213732-46213777)
chr7 (435-486)||(31341117-31341168)
chr7 (435-486)||(35536030-35536081)
chr7 (441-487)||(3610835-3610881)
chr7 (400-478)||(5369793-5369871)
chr7 (448-486)||(33894559-33894597)
chr7 (436-485)||(7244626-7244675)
chr7 (441-486)||(24973873-24973918)
chr7 (436-473)||(27481403-27481440)
chr7 (449-486)||(33871201-33871238)
chr7 (442-486)||(2013129-2013173)
chr7 (438-486)||(4591468-4591516)
chr7 (450-486)||(36874061-36874097)
[»] chr6 (14 HSPs)
chr6 (448-486)||(10452456-10452494)
chr6 (435-485)||(31461601-31461651)
chr6 (436-486)||(31668781-31668831)
chr6 (435-483)||(29249397-29249445)
chr6 (435-486)||(2514625-2514676)
chr6 (435-470)||(7148590-7148625)
chr6 (435-486)||(7351704-7351755)
chr6 (435-486)||(29274325-29274376)
chr6 (443-486)||(33068657-33068700)
chr6 (436-478)||(10616890-10616932)
chr6 (435-473)||(33823389-33823427)
chr6 (448-485)||(4247731-4247768)
chr6 (425-486)||(13360648-13360709)
chr6 (434-486)||(29269818-29269870)
[»] scaffold0590 (1 HSPs)
scaffold0590 (441-486)||(1170-1215)
[»] scaffold0275 (1 HSPs)
scaffold0275 (441-486)||(2760-2805)
[»] chr3 (6 HSPs)
chr3 (435-478)||(41028955-41028998)
chr3 (436-486)||(32703062-32703112)
chr3 (438-476)||(41724137-41724175)
chr3 (436-486)||(51278253-51278303)
chr3 (435-484)||(20195124-20195173)
chr3 (450-486)||(21661452-21661488)
[»] scaffold0654 (1 HSPs)
scaffold0654 (435-484)||(6735-6784)
[»] scaffold0014 (1 HSPs)
scaffold0014 (435-484)||(116654-116703)


Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Complemental strand, 55994758 - 55994208
Alignment:
Q  11 cacagaaataaagggcatcaagaaatccatttgtttttatgccctcaatttggtaacttgttagatagaaacacaaggtacctgtgcctaggtatgctgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55994758 cacagaaataaagggcatcaagaaatccatttgtttttatgccttcaatttggtaacttgttagatagaaacataaggtacctgtgcctaggtatgctgc 55994659  T
Q  111 taaacacaagaacactagcctgaacttgaattctgcttcttgtttttcagttatacattggggagataaaggggtttggaggacaccattctgttcttgc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  55994658 taaacacaagaacactagcctgaacttgaattctgcttcttgtttttcagttatacattggggagataaaggggattggaggacaccattctgttcttgc 55994559  T
Q  211 tgcagaatgatatctgtctctgaagtgccgccacaccgcggttttcttctctgaagaagttcattcttctcattgagaagagaatgttcccttgactctg 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55994558 tgcagattgatatctgtctctgaagtgccgccacaccgcggttttcttctctgaagaaggtcattcttctcattgagaagagaatgttcccttgactctg 55994459  T
Q  311 aaagcaatagctgttgagtttcatcactgcccatcaacttacttcctaatgcttcattcgttacctgaaaagttgaagttctaagatgcttaggccctgt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55994458 aaagcaatagctgttgagtttcatcactgcccatcaacttacttcctaatgcttcattcgttacctgaaaagttgaagttctaagatgcttaggccctgt 55994359  T
Q  411 ttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataagaaaatataaaatgtaatcaatatatttccatgttat 510  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55994358 ttggataaacagactaattatgcccttattatataaatgcttatgtataagctatttctataagaaaatataaaatgtaatcagtatatttccatgttat 55994259  T
Q  511 aaactattttaataagtcattgtggagagtttattgaaacgagttcaaaac 561  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55994258 aaactattttaataagtcattgcggagagtttattgaaacgagttcaaaac 55994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 19422314 - 19422384
Alignment:
Q  408 tgtttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataagaaaa 478  Q
    |||||||||||||||  ||| || || ||||| ||||||||||||||||||||| ||||||||||| ||||    
T  19422314 tgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataacaaaa 19422384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 25487683 - 25487641
Alignment:
Q  444 taaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  25487683 taaatgcttatgtataagctatttctataacaaaaaataaaat 25487641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 47970247 - 47970293
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaatg 487  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  47970247 atataagtgcttatgtataagctatttctataacaaaagataaaatg 47970293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 4191663 - 4191712
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||| |||||| |||||||||||||||||||||||||| |||| ||||||    
T  4191663 ttatcatataagtgcttatgtataagctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 22684669 - 22684625
Alignment:
Q  429 tatgcccttattatataaatgcttatgtataagctatttctataa 473  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||    
T  22684669 tatgcgcttatcatataaatgcttctgtataagctatttctataa 22684625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 9680595 - 9680638
Alignment:
Q  443 ataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| |||| |||| |||||||    
T  9680595 ataaatgcttatgtataagctatttcgataataaaagataaaat 9680638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 9843842 - 9843775
Alignment:
Q  406 cctgtttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataa 473  Q
    ||||||||||||||||   ||| || |  ||||| |||||| ||||||||||||||||||||||||||    
T  9843842 cctgtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctatttctataa 9843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 1404350 - 1404396
Alignment:
Q  440 tatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||| | |||||||||||||||||| |||| |||||||    
T  1404350 tatataaatgcttttttataagctatttctataataaaagataaaat 1404396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 2980617 - 2980575
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaa 478  Q
    |||| |||||| |||||||||||||||||||||||||| ||||    
T  2980617 ttatcatataagtgcttatgtataagctatttctataacaaaa 2980575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 24936238 - 24936284
Alignment:
Q  440 tatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||| || ||||||||||| ||||||||||| ||||||||||||    
T  24936238 tatataagtggttatgtataagttatttctataacaaaatataaaat 24936284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 6364087 - 6364123
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6364087 cttatgtataagctatttctataacaaaagataaaat 6364123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 478
Target Start/End: Original strand, 20521444 - 20521472
Alignment:
Q  450 cttatgtataagctatttctataagaaaa 478  Q
    |||||||||||||||||||||||||||||    
T  20521444 cttatgtataagctatttctataagaaaa 20521472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 20907103 - 20907147
Alignment:
Q  442 tataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| || ||||||||||||||||| |||||||||| |||||||    
T  20907103 tataagtgtttatgtataagctatttgtataagaaaagataaaat 20907147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 486
Target Start/End: Original strand, 29588807 - 29588854
Alignment:
Q  439 ttatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  29588807 ttatataagtgcttatgtataagctatttctataacaaaatataaaat 29588854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 37063215 - 37063170
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||    
T  37063215 atataaatgcttatgtataaactatttctataacaaaagataaaat 37063170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 16945121 - 16945077
Alignment:
Q  442 tataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  16945121 tataagtgcttatgtataagctatttctacaagaaaagataaaat 16945077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 11054117 - 11054160
Alignment:
Q  443 ataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||    
T  11054117 ataaacgcttatgtataagctatttctataataaaagataaaat 11054160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 11684346 - 11684397
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||| |||| ||||||||||||||| ||||| ||||||||||||    
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaat 11684397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 20982282 - 20982231
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||| |||||||||||||||||||||||||| |||  |||||||    
T  20982282 cttatcatataagtgcttatgtataagctatttctataacaaaggataaaat 20982231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 26516221 - 26516272
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||| ||||||||||||||||||||||| || |||| |||||||    
T  26516221 cttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 7096261 - 7096223
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  7096261 tgcttatgtataagctatttctataacaaaagataaaat 7096223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 13224365 - 13224403
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  13224365 tgcttatgtataagctatttctataacaaaagataaaat 13224403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 1773557 - 1773521
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||| |||| |||||||    
T  1773557 cttatgtataagctatttctataacaaaagataaaat 1773521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 3951935 - 3951883
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaatgtaatca 493  Q
    |||||| |||||||| ||||||||||| ||||| |||| |||||||| |||||    
T  3951935 atataagtgcttatgaataagctatttatataacaaaagataaaatgaaatca 3951883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 485
Target Start/End: Complemental strand, 3645962 - 3645913
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  3645962 ttatcatataagtgcttgtgtataagctatttctataagaaaatataaaa 3645913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 28769486 - 28769435
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||||||||||||||||||||||| |||||| ||| ||||||||    
T  28769486 cttatcatataaatgcttatgtataagctattcctataacaaactataaaat 28769435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 8536189 - 8536150
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaata 480  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  8536189 atataagtgcttatgtataagctatttctataacaaaata 8536150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 14482125 - 14482176
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||| |||||||    
T  14482125 cttatcatataagtgcttatgtataaactatttctataacaaaagataaaat 14482176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 4558722 - 4558772
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||| ||| || ||||||||||||||||||||||| |||| |||||||    
T  4558722 ttattatgtaagtgtttatgtataagctatttctataataaaagataaaat 4558772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 26716583 - 26716545
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataa 473  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  26716583 cttattatataagtgcttatgtataagctacttctataa 26716545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 29699178 - 29699228
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| ||||||||||||||||| ||| ||||||||||| |||| |||||||    
T  29699178 ttatcatataaatgcttatgtacaagttatttctataacaaaagataaaat 29699228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 26215433 - 26215470
Alignment:
Q  449 gcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  26215433 gcttatgtataagctatttctataacaaaagataaaat 26215470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 8629033 - 8629077
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaata 480  Q
    |||| |||||| ||||||| |||||||||||||||||| ||||||    
T  8629033 ttatcatataagtgcttatttataagctatttctataacaaaata 8629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 25869386 - 25869354
Alignment:
Q  441 atataaatgcttatgtataagctatttctataa 473  Q
    ||||||||||||||||||||||||||| |||||    
T  25869386 atataaatgcttatgtataagctatttttataa 25869354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 39866881 - 39866833
Alignment:
Q  438 attatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||| | ||||||| ||||||| |||| |||||||    
T  39866881 attatataaatgcttatgcacaagctatctctataacaaaagataaaat 39866833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 42597339 - 42597375
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||| |||| |||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaat 42597375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 29046095 - 29046011
Alignment:
Q  400 ttaggccctgtttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataagaaaatataaa 484  Q
    ||||||| |||||||||||||||| ||| || || |||||  ||||| ||||| |||||||| ||||||||||| |||| |||||    
T  29046095 ttaggccatgtttggataaacagattaattaagcacttatcgtataagtgcttgtgtataagatatttctataacaaaagataaa 29046011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 46499995 - 46499950
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||    
T  46499995 atataagtgcttatctataagctatttctataagaaaagataaaat 46499950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 2462903 - 2462938
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataa 483  Q
    |||||||||||||||||||||||||| |||||||||    
T  2462903 tgcttatgtataagctatttctataacaaaatataa 2462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 4549797 - 4549840
Alignment:
Q  443 ataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||    
T  4549797 ataaatgcttatgtacaagctatttctataacaaaagataaaat 4549840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 13037793 - 13037836
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaa 484  Q
    |||||| |||||||||||||||||||||||||| |||| |||||    
T  13037793 atataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 30043671 - 30043714
Alignment:
Q  439 ttatataaatgcttatgtataagctatttctataagaaaatata 482  Q
    |||||||| || ||||||||||||||||||||||| ||||||||    
T  30043671 ttatataagtgattatgtataagctatttctataataaaatata 30043714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 486
Target Start/End: Original strand, 23895256 - 23895310
Alignment:
Q  432 gcccttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||| |||||| |  ||||||||||||||||||||||| |||| |||||||    
T  23895256 gcccttatcatataagttattatgtataagctatttctataacaaaagataaaat 23895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 486
Target Start/End: Complemental strand, 35080220 - 35080166
Alignment:
Q  432 gcccttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||  ||||| ||||||| |||||||||| |||| |||||||    
T  35080220 gcccttattatataaacccttatatataagcaatttctataacaaaaaataaaat 35080166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 52013820 - 52013858
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataa 473  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  52013820 cttatcatgtaaatgcttatgtataagctatttctataa 52013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 477
Target Start/End: Original strand, 26179389 - 26179458
Alignment:
Q  408 tgtttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataagaaa 477  Q
    ||||||||||| || | ||||||  | ||||| |||||| ||||||||||||| ||||||||| ||||||    
T  26179389 tgtttggataaccaaattaactacacgcttataatataagtgcttatgtataaactatttctagaagaaa 26179458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 45107552 - 45107589
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaa 478  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  45107552 atataagtgcttatctataagctatttctataagaaaa 45107589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 1255577 - 1255541
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctata 472  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  1255577 ttatcatataaatgcttatgtagaagctatttctata 1255541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 42397693 - 42397737
Alignment:
Q  442 tataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||||||||||||||||||| ||| |||| |||||||    
T  42397693 tataagtgcttatgtataagctatttctgtaacaaaacataaaat 42397737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 50319230 - 50319266
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||| |||| |||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaat 50319266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 25609727 - 25609770
Alignment:
Q  443 ataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| ||||||||||||||||||||||||||||||| |||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaat 25609770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 10150678 - 10150729
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||| || ||||||||||| ||||||||||| |||| |||||||    
T  10150678 cttattatataagtgtttatgtataagttatttctataataaaagataaaat 10150729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 3102617 - 3102667
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| |||||| |||||||||||||||||||| ||||  ||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaaaatataaaat 3102667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 5133708 - 5133746
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaat 5133746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 28810519 - 28810469
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||  |||||| |||||||||||| |||||| ||||||||||||    
T  28810519 ttattatatatgtgcttaagtataagctattcctataataaaatataaaat 28810469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 32098446 - 32098404
Alignment:
Q  444 taaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||| |||||||||||||||||| |||| |||||||    
T  32098446 taaatgcttatatataagctatttctataacaaaagataaaat 32098404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 1899833 - 1899874
Alignment:
Q  445 aaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  1899833 aaatgcttatgtataagcgatttctataataaagtataaaat 1899874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 3673736 - 3673781
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||||    
T  3673736 atataagtgcttatgtattagttatttctataacaaaatataaaat 3673781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 18179377 - 18179332
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||| |||||| |||| ||||||||| |||||||    
T  18179377 atataaatgcttatgtttaagctgtttcaataagaaaaaataaaat 18179332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 27237993 - 27237956
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaa 485  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  27237993 tgcttatgtataagctatttcaataataaaatataaaa 27237956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 41033084 - 41033047
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  41033084 tgcttatgtataagctatttctataacaaaagataaaa 41033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 19977898 - 19977934
Alignment:
Q  449 gcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  19977898 gcttatgtataagctattgctataagaaaagataaaa 19977934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 45593865 - 45593815
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| ||||||||||||||||||||||||||||| ||| |||| |||||||    
T  45593865 ttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaat 45593815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 46213732 - 46213777
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||||    
T  46213732 atataagtgcttatgtaaaagctatttctataacaaaatataaaat 46213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 31341117 - 31341168
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| || |||||||||||||||||||||||| ||||| |||| |||||||    
T  31341117 cttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaat 31341168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 35536030 - 35536081
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| ||||||| ||||||||||||||||||||||||| | || |||||||    
T  35536030 cttatcatataaaggcttatgtataagctatttctataacataagataaaat 35536081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 3610881 - 3610835
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaatg 487  Q
    |||||| ||||||||||||||||||||||| || |||| ||||||||    
T  3610881 atataagtgcttatgtataagctatttctacaacaaaagataaaatg 3610835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 5369871 - 5369793
Alignment:
Q  400 ttaggccctgtttggataaacagactaactatgcccttattatataaatgcttatgtataagctatttctataagaaaa 478  Q
    ||||||||||||||||||||||   ||| || || ||||  | |||| ||||||||||||||||| |||||||| ||||    
T  5369871 ttaggccctgtttggataaacaatttaattaagcacttagcaaataagtgcttatgtataagctaattctataaaaaaa 5369793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 33894559 - 33894597
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat 33894597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 7244626 - 7244675
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||| |||||| |||||||||||||||||||||||||  |||| ||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaa 7244675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 24973873 - 24973918
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| |||||||||| ||||||||||||||| |||| |||||||    
T  24973873 atataagtgcttatgtaaaagctatttctataacaaaagataaaat 24973918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 27481440 - 27481403
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataa 473  Q
    ||||||||||| || |||||||||||||||||||||||    
T  27481440 ttattatataagtgtttatgtataagctatttctataa 27481403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 33871201 - 33871238
Alignment:
Q  449 gcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  33871201 gcttatgtataagctatttctattataaaatataaaat 33871238  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 2013129 - 2013173
Alignment:
Q  442 tataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||  ||||||||||| |||| |||||||    
T  2013129 tataaatgcttatgtataatttatttctataacaaaagataaaat 2013173  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 4591468 - 4591516
Alignment:
Q  438 attatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||| || ||||||||||||||| ||||||| |||| |||||||    
T  4591468 attatataagtgtttatgtataagctatctctataacaaaagataaaat 4591516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 36874097 - 36874061
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36874097 cttatgtataagctatttctataagaaatgataaaat 36874061  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 10452494 - 10452456
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10452494 tgcttatgtataagctatttctataacaaaatataaaat 10452456  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 31461601 - 31461651
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| ||||||    
T  31461601 cttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 31668831 - 31668781
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| |||||| |||||||||||||||||||||||||| |||| |||||||    
T  31668831 ttatcatataagtgcttatgtataagctatttctataacaaaacataaaat 31668781  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 483
Target Start/End: Original strand, 29249397 - 29249445
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataa 483  Q
    ||||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  29249397 cttatcatataagtgcttatgtatcagctatttctataacaaaatataa 29249445  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 2514625 - 2514676
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| || ||| |||||||||||||||||||||||||| |||| |||||||    
T  2514625 cttatcatgtaagtgcttatgtataagctatttctataataaaagataaaat 2514676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 7148590 - 7148625
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttcta 470  Q
    |||||||||||| |||||||||||||||||||||||    
T  7148590 cttattatataagtgcttatgtataagctatttcta 7148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 7351755 - 7351704
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  7351755 cttatcatataaatgcttatgtataaactatttatataataaactataaaat 7351704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 29274376 - 29274325
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||| ||| ||||||||||||||||||||||||||||  |||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaat 29274325  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 33068700 - 33068657
Alignment:
Q  443 ataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||    
T  33068700 ataaatgcttatgtataagttatttctataacaaaagataaaat 33068657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 10616932 - 10616890
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaa 478  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  10616932 ttatcatataaatacttatgtataagctatttctataataaaa 10616890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 33823427 - 33823389
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataa 473  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  33823427 cttattatataaatgtttatgcataagctatttctataa 33823389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 4247768 - 4247731
Alignment:
Q  448 tgcttatgtataagctatttctataagaaaatataaaa 485  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  4247768 tgcttatgtataagctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 13360648 - 13360709
Alignment:
Q  425 taactatgcccttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| || ||||| |||||| |||||||||  || |||||||||||| ||||||||||||    
T  13360648 taactaagcgcttatcatataagtgcttatgtgcaaactatttctataacaaaatataaaat 13360709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 29269818 - 29269870
Alignment:
Q  434 ccttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| |||||||||||| ||||||| |||||||||||| | || |||||||    
T  29269818 ccttatcatataaatgcttgtgtataaactatttctataacagaagataaaat 29269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 1215 - 1170
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||    
T  1215 atataagtgcttatgtataagctatttctataacaaaagataaaat 1170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 2760 - 2805
Alignment:
Q  441 atataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||    
T  2760 atataagtgcttatgtataagctatttctataacaaaagataaaat 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 41028998 - 41028955
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaa 478  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||    
T  41028998 cttatcatataagtgcttatgtataagctatttctataacaaaa 41028955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 32703062 - 32703112
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| ||||||||| ||||||||||||||||||||| | |||| |||||||    
T  32703062 ttatcatataaatgtttatgtataagctatttctattataaaagataaaat 32703112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 476
Target Start/End: Original strand, 41724137 - 41724175
Alignment:
Q  438 attatataaatgcttatgtataagctatttctataagaa 476  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  41724137 attatataagtgcttatgtacaagctatttctataagaa 41724175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 51278303 - 51278253
Alignment:
Q  436 ttattatataaatgcttatgtataagctatttctataagaaaatataaaat 486  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||| ||||    
T  51278303 ttatcatataattgctaatgtataagctatttctataacaaaatattaaat 51278253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 20195173 - 20195124
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaa 484  Q
    ||||| |||||||||||||| ||||||||| |||||||| |||| |||||    
T  20195173 cttatcatataaatgcttatttataagctagttctataacaaaagataaa 20195124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 21661452 - 21661488
Alignment:
Q  450 cttatgtataagctatttctataagaaaatataaaat 486  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  21661452 cttatgtataagctatttcaataacaaaatataaaat 21661488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 6784 - 6735
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaa 484  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||| |||||    
T  6784 cttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 6735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 116703 - 116654
Alignment:
Q  435 cttattatataaatgcttatgtataagctatttctataagaaaatataaa 484  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||| |||||    
T  116703 cttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 116654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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