View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_high_9 (Length: 458)
Name: NF10949_high_9
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 12518936 - 12518491
Alignment:
| Q |
18 |
agtaaagcccaagatagaaacagaacacaatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagag |
117 |
Q |
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| T |
12518936 |
agtaaagcccaagatagaaacagaacacaatgcattgagccaagtccaagaccctttgctaatcctgcttttctaccgtttacgtaagttttcataagag |
12518837 |
T |
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| Q |
118 |
ctgctttatatgatcttactgctctttcttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaaga |
217 |
Q |
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| T |
12518836 |
ctgctttatatgatcttactgctctttcttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaaga |
12518737 |
T |
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| Q |
218 |
aagtgtgagatgctaaatttgaacaagatttacatgtgcatataacaattaacattaatgcgtagtaatattcacttcggttatgtgtatgtttggattc |
317 |
Q |
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| T |
12518736 |
aagtgtgagatgctaaatttgaacaagatttacatgtgcatataacaattaacattaatgcatagtaatattcacttcggttatgtgtatgtttggattc |
12518637 |
T |
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| Q |
318 |
gcggcgagtttggttgaataatttataagcattctaacctaat-------------ggactaatgagctgaatttattttgccgacttgcgaggaaaaac |
404 |
Q |
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| T |
12518636 |
gcggcgagtttggttgaataatttataagcattctaacctaatggacctgactaatggactaatgagctgaatttattttgccgagttgcgaggaaaaac |
12518537 |
T |
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| Q |
405 |
aaccaactttacctcttcagcaatttcaccagccctgacctatgct |
450 |
Q |
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| T |
12518536 |
aaccaactttacctcttcagcaatttcaccagccctgacatatgct |
12518491 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 27722042 - 27721876
Alignment:
| Q |
23 |
agcccaagatagaaacagaacacaatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagagctgct |
122 |
Q |
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|||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| || || ||||||| ||| || || || ||| | ||||| || |
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| T |
27722042 |
agcccatgatagaaaaagaacacaatgcatagagcctagtcctagaccctttgctaaaccggcttttcgaccattcttatatgtgttccttagagccact |
27721943 |
T |
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| Q |
123 |
ttatatgatcttactgctctttcttctcctgcaaatgcttgaactgttctgacattgcctatgacct |
189 |
Q |
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|| |||||| | |||||||||| ||||||| |||||||||| || |||| ||||| ||||| |||| |
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| T |
27721942 |
ttgtatgatatcactgctctttgttctcctccaaatgcttgtacagttcgaacatttcctatcacct |
27721876 |
T |
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