View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_1 (Length: 588)
Name: NF10949_low_1
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 4676502 - 4677083
Alignment:
| Q |
7 |
aggagcagagaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
106 |
Q |
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| T |
4676502 |
aggagcagaaaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
4676601 |
T |
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| Q |
107 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
206 |
Q |
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| T |
4676602 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
4676701 |
T |
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| Q |
207 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacct |
306 |
Q |
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| T |
4676702 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacct |
4676801 |
T |
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| Q |
307 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg |
406 |
Q |
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| T |
4676802 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg |
4676901 |
T |
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| Q |
407 |
tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgttgctgctgttgcttggttccttcttcttcaaat |
506 |
Q |
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| T |
4676902 |
tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgctgctgctgttgtttggtttcttcttcttcaaat |
4677001 |
T |
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| Q |
507 |
tgtttctccatcttttgatcatgattgctactctgcttggnnnnnnnatgtatggaaccagagaggccttcaccttcatata |
588 |
Q |
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| T |
4677002 |
tgtttctccatcttttgatcatgattgctactctgcttggtttttttatgtatggaaccagagaggccttcaccttcatata |
4677083 |
T |
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