View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_12 (Length: 392)
Name: NF10949_low_12
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 32223829 - 32224227
Alignment:
| Q |
1 |
ggttcatattcacaagtatatgtatgtatgta-------ctatagttgagagactaataacttaacttacccattacccataacccatttacagctaaga |
93 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223829 |
ggttcatattcacaagtatatgtatgtatgtatgtactactatagttgagagactaataacttaacttacccattacccataacccatttacagctaaga |
32223928 |
T |
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| Q |
94 |
acttgtcatgnnnnnnntatcatgatggtaaaagtaaagggagaggattgaatacagattgcacaaatgtcataaaaatgtttcactgttttcacaaaaa |
193 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223929 |
acttgtcatgaaaaaaatatcatgatggtaaaagtaaagggagaggattgaatacagattgcacaaatgtcataaaaatgtttcactgttttcacaaaaa |
32224028 |
T |
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| Q |
194 |
tccttgttgttgctaaaaatagaacaaaaaacagaatcatccatccactactcaactttcacttcttccactcaactagttacaccattgatctgtttta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32224029 |
tccttgttgttgctaaaaatagaacaaaaaacagaatcatccatccactactcaactttcacttcttccactcaactagttacaccattgatctgtttta |
32224128 |
T |
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| Q |
294 |
ttaacaccaaacccaaaacccatttcgtgattgccgagcgtcgttcatattatctgcacaaacactcagaaccaaagagagagaaagagaaagtagata |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32224129 |
ttaacaccaaacccaaaacccatttcgtgattgccgagcgtcgttcatattatctgcacaaacactcagaaccaaagagagagaaagagaaagtagata |
32224227 |
T |
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