View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_14 (Length: 362)
Name: NF10949_low_14
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8571039 - 8570693
Alignment:
| Q |
1 |
tccgcaaggatcataccattacggcatgataaacttaacgaggacaattgtactatcaagttcagctggacaagttaatgggaaacaaagatacgcaatt |
100 |
Q |
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| T |
8571039 |
tccgcaaggatcataccattacggcatgataaacttaacgaggacaattgtactatcaagttcagctggacaagttaatgggaaacaaagatacgcaatt |
8570940 |
T |
|
| Q |
101 |
aacagcgtgtcttatgttgcccccgacactcctcttaagctggctgacttcttcaagatagcaggtgtttaccgtcctggaagcatctctgatagaccta |
200 |
Q |
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| T |
8570939 |
aacagcgtgtcttatgttgcccccgacactcctcttaagctggctgatttcttcaagatagcaggtgtttaccgtcctggaagcatctctgatagaccta |
8570840 |
T |
|
| Q |
201 |
gtggtggtggtatttacctcgacacttctgttatgcaaactgactacagaacatttgttgagattgttttccaaaatgacgaagacatccttcagagcta |
300 |
Q |
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| T |
8570839 |
gtggtggtggtatttacctcgacacttctgttatgcaaactgactacagaacatttgttgagattgttttccaaaatgacgaagacatccttcagagcta |
8570740 |
T |
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| Q |
301 |
tcatctagatggctactctttctttgttgttgggtgagtatgatttt |
347 |
Q |
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| T |
8570739 |
tcatctagatggctactctttctttgttgttgggtgagtatgatttt |
8570693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 53749576 - 53749312
Alignment:
| Q |
74 |
gttaatgggaaacaaagatacgcaattaacagcgtgtcttatgttgcccccgacactcctcttaagctggctgacttcttcaagatagcaggtgtttacc |
173 |
Q |
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| T |
53749576 |
gttaatggcaagcaaagatatggaataaacagtgtatcttatgttgtcccagacacgcctcttaagctcgctgattacttcaaaatctccggtgtttttc |
53749477 |
T |
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| Q |
174 |
gtcctggaagcatctctgatagacctagtggtggtggtatttacctcgacacttctgttatgcaaactgactacagaacatttgttgagattgttttcca |
273 |
Q |
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| ||||||||| ||||| ||||| | ||||||||| ||||||| ||||| ||||| |||||| |||| |||||| | |||||||||||||| ||||| |
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| T |
53749476 |
gcgttggaagcatatctgagagacccactggtggtggcctttaccttgacacatctgtgatgcaagctgattacagatcttttgttgagattgtcttcca |
53749377 |
T |
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| Q |
274 |
aaatgacgaagacatccttcagagctatcatctagatggctactctttctttgttgttgggtgag |
338 |
Q |
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||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53749376 |
aaacaacgagaacattgttcagagctatcatcttgatggctactctttctttgttgttgggtgag |
53749312 |
T |
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