View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_15 (Length: 314)
Name: NF10949_low_15
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_15 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34701271 - 34701574
Alignment:
| Q |
1 |
aaacattgggtcgactacaagtaacgtaaattcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggattt |
100 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34701271 |
aaacattgtgtcgacttcaagtaacgtaaattcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggattt |
34701370 |
T |
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| Q |
101 |
gcgagattttagcgtaacgaaccataaatgggattcatgagagggaaccaatgtttgagttatatgatgttgttgcttaaacgcatttaacttctcattt |
200 |
Q |
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| T |
34701371 |
gcgagattttagcgtaacgaaccataaatgggattcatgagagggaaccaatgtttgagttatatgatgttgttgcttaaacgcatttaacttctcattt |
34701470 |
T |
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| Q |
201 |
tgggtccctttccttcctcgtataccgaacaaatatctcactcacgtgctcgactactggcccatgtttttgagtaagtttcaagtcacctataacattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34701471 |
tgggtccctttccttcctcgtataccgaacaaatatctcactcacgtgctcgactactggcccatgtttttgagtaagtttcaagtcacctataacattc |
34701570 |
T |
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| Q |
301 |
tctg |
304 |
Q |
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|||| |
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| T |
34701571 |
tctg |
34701574 |
T |
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Target: scaffold0005 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 171971 - 171897
Alignment:
| Q |
28 |
aaattcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggatttgc |
102 |
Q |
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| T |
171971 |
aaattcatgtcattctcattactgaatatgctctttaaactacagtggtacatatgataattaattggggtttgc |
171897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 14645320 - 14645394
Alignment:
| Q |
28 |
aaattcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggatttgc |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
14645320 |
aaattcatgtcattctcattactgaatatgctctttaaactacagtggtacatatgataattaattggggtttgc |
14645394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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