View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_16 (Length: 308)
Name: NF10949_low_16
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 39558811 - 39559086
Alignment:
| Q |
1 |
aagtgaaatccttggatttggctttgactccaccagacaaagttcaagttgcaatagattgcttacctacaactttacaaagaccaattaatggaacaaa |
100 |
Q |
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| T |
39558811 |
aagtgaaatccttggatttggctttgactccaccagacaaagttcaagttgcaatagattgcttacctacaactttacaaagaccaattaatggaacaaa |
39558910 |
T |
|
| Q |
101 |
gccttcatttaatcggtggaccataatggactatttcagagcttacagctcaggagatataacaccacacatggtattgctctttcaccttcttagatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39558911 |
gccttcatttaatcggtggaccataatggactatttcagagcttacagctcaggagatataacaccacacatggtattgctctttcaccttcttagatat |
39559010 |
T |
|
| Q |
201 |
tttttcatcaagtcctaatcctaccattattgtgttaattcttagtcattgactttttcagaaaaactttgtcatt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559011 |
tttttcatcaagtcctaatcctaccattattgtgttaattcttagtcattgactttttcagaaaaactttgtcatt |
39559086 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 44419810 - 44419871
Alignment:
| Q |
117 |
tggaccataatggactatttcagagcttacagctcaggagatataacaccacacatggtatt |
178 |
Q |
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| T |
44419810 |
tggacaataatggattattccaaagcttacagatcaggcgatataacaccacgcttggtatt |
44419871 |
T |
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