View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_20 (Length: 247)
Name: NF10949_low_20
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 19883815 - 19883988
Alignment:
| Q |
60 |
actaaagacaaagagtgagaaagaatatagcttttgcttaagcttaagtttcactcaacattgaacatattgcactttgcttttgtcacatatatatgtg |
159 |
Q |
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| T |
19883815 |
actaaagacaaaaagtgagaaaggatgtaacttttgcttaagcttaagtttcactcaacactgaacatattgcactttgcttttgtcacgtatatatgtg |
19883914 |
T |
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| Q |
160 |
ttgtttaactcagttcaaagctgtaacgataaaaccacgagagtgaagaaaggaataaaaataatgcaatacac |
233 |
Q |
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| T |
19883915 |
ttgtttcactcagtttaaagctgcaacgataaaaacacgaaagtgaagaaaggaataaaaataaagcaagacac |
19883988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 20096934 - 20096722
Alignment:
| Q |
21 |
caaggccatgagaaacacgacgggata----gccttataataaactaaagacaaagagtgagaaagaatatagcttttgcttaagcttaagtttcactca |
116 |
Q |
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| T |
20096934 |
caaggccatgagaaacacgacgagatacgaagccttataatgctaaagagacaaaaggtgagaaagaatatagcttttgcttaagcttaagtttcactca |
20096835 |
T |
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| Q |
117 |
acattgaacatattgcactttgcttttgtcacatatatatgtgttgtttaactcagttcaaagctgtaacgataaaaccacgagagtgaagaaaggaata |
216 |
Q |
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| T |
20096834 |
gcactgaacattttgcactttgcttttgtc----atatatgtgttgtttcactcagtttaaagctgcaacgataaaatcacgagagtgaagaaaggaata |
20096739 |
T |
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| Q |
217 |
aaaataatgcaatacac |
233 |
Q |
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| T |
20096738 |
aaaataaagcaagacac |
20096722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 20125035 - 20124955
Alignment:
| Q |
17 |
acatcaaggccatgagaaacacgacgggatagccttataataaactaaagacaaagagtgagaaagaatatagcttttgctt |
98 |
Q |
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| T |
20125035 |
acatcaaggc-atgagaaacaggacgggataaccttataatatgcaaaagaaaaatggtgagaaagaatgtatcatttgctt |
20124955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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