View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_23 (Length: 225)
Name: NF10949_low_23
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 36421082 - 36420886
Alignment:
| Q |
13 |
aacctgtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggatgtccggatcaccagctaatgtcatttgcacaat |
112 |
Q |
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| T |
36421082 |
aaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtgaggatgtccggatcaccagctaatgttatttgcacaat |
36420983 |
T |
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| Q |
113 |
ggcaaatgcagatatgattagtgttagcatttttgaagttgtggaagaagacattgtgtatgatttgatagaatggaagatttgtgttttttgaaat |
209 |
Q |
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| T |
36420982 |
ggcaaatgcagatatgattagtgttagcatttttgatgttgtggaagaagacattgtgtatgatttgatagaatggaagatttgtgttttttgaaat |
36420886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 36424606 - 36424432
Alignment:
| Q |
13 |
aacctgtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggatgtccggatcaccagctaatgtcatttgcacaat |
112 |
Q |
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| T |
36424606 |
aaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggatgtctggatcaccagctagtgttatttgcacaat |
36424507 |
T |
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| Q |
113 |
ggcaaatgcagatatgattagtgttagcatttttgaagttgtggaagaagacattgtgtatgatttgatagaatg |
187 |
Q |
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| T |
36424506 |
ggcaaatgcagatatgattagtgtgaggagttttgaagctgtggaagaagacattgtgtatgatttgatggaatg |
36424432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 36427579 - 36427442
Alignment:
| Q |
13 |
aacctgtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggatgtccggatcaccagctaatgtcatttgcacaat |
112 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||| ||| ||||||||||| |
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| T |
36427579 |
aaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggatgtctggatcactagctagtgttatttgcacaat |
36427480 |
T |
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| Q |
113 |
ggcaaatgcagatatgattagtgttagcatttttgaag |
150 |
Q |
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| T |
36427479 |
ggcaaatgcagatatgattagtgttagcatttttgaag |
36427442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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