View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_24 (Length: 222)
Name: NF10949_low_24
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45595198 - 45595072
Alignment:
| Q |
1 |
aaaaagtgaatgatctccacaaaggaaggtatgtaattggaaaaaatagaaaaacattaatgtaaatgtcaagtagtttaataataagttggataaatat |
100 |
Q |
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| T |
45595198 |
aaaaagtgaatgatctccacaaaggaaggtatgtaattggaaaaaatagaaaaacattaatgtaaatgtcaagtagtttaataat-agttggataaatat |
45595100 |
T |
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| Q |
101 |
gttttatatacatatcgtatatcatatt |
128 |
Q |
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| T |
45595099 |
gttttatatacatatcgtatatcatatt |
45595072 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 45594993 - 45594907
Alignment:
| Q |
123 |
catattactcattcagagacatgtttacacctcagattatactaataatgattaaaacaatttatttatttgattgatatttggtctgtg |
212 |
Q |
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| T |
45594993 |
catattactcattcagagacatgtttacacctcagattatac---taatgattaaaacaatttatttatttgattgatatttggtttgtg |
45594907 |
T |
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