View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_26 (Length: 205)
Name: NF10949_low_26
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 2787907 - 2788083
Alignment:
| Q |
18 |
aaataagctcattggagggttacctcaaaagaccatatttgattctttggacgaaaatggtttcaattttgggatctattatcaacaaccaccatccacc |
117 |
Q |
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| T |
2787907 |
aaataagctcattggagggttacctcaaaagaccatatttgattctttggacgaaaatggtttcaattttgggatctattatcaacaaccaccatccacc |
2788006 |
T |
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| Q |
118 |
cttttctacaggtttgttcatttccatttttgtaccttaatatctaacgactaacgcacatttcctcatttttctgt |
194 |
Q |
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| T |
2788007 |
cttttctacaggtttgttcatttccgtttttgtaccttaatatctaacgactaacgcacatttccccatttttctgt |
2788083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 7363003 - 7363117
Alignment:
| Q |
18 |
aaataagctcattggagggttacctcaaaagaccatatttgattctttggacgaaaatggtttcaattttgggatctattatcaacaaccaccatccacc |
117 |
Q |
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||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7363003 |
aaataagctcattgggggattacctcaaaataccatatttgattctttagacgaaaatggtttcaattttgggatctattatcaacaaccaccatccacc |
7363102 |
T |
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| Q |
118 |
cttttctacaggttt |
132 |
Q |
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| T |
7363103 |
cttttctacaggttt |
7363117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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