View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_3 (Length: 541)
Name: NF10949_low_3
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 46486412 - 46486936
Alignment:
| Q |
19 |
aaagttacattctcaatctcaactagcagatcagtgcaagcccaagtaacttttctacattttttgaattgctataggctat---------ggcacacaa |
109 |
Q |
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| T |
46486412 |
aaagttacattctcaatctcaactagcagatcagtgcaagcccaagtaacttttctacattttttgaattgctatagactatataggctgtggcacacag |
46486511 |
T |
|
| Q |
110 |
ctaaggatataaaattaaatttaatttcatcctaatcttattcatatatatacaaatttaaaaacacacaagaatgatgttgttgcaatgctcgaaactc |
209 |
Q |
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| T |
46486512 |
ctaaggatataaaattaaatttaatttcatcctaatcttattcatatatatacaaatttaaaaacacacaagattgatgttgttgcaatgctcgaaactc |
46486611 |
T |
|
| Q |
210 |
atgaaagaaaaagatacatgaactttgtcacaaaaactcaacataagtgtcatgactttagtagtgcagaattttagggacaatgatgtttgatgtaggt |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46486612 |
atgaaagaaaaagatatatgaactttgtcacaaaaactcaacctaagtgtcatgactttagtagtgcagaattatagggacaatgatgtttgatgtaggt |
46486711 |
T |
|
| Q |
310 |
agtttatttcatggtgacaaaaactatacaataatggtaagtcaagaattatttgaacgtataatgttcaaaattcgagtcttgagcaacacacttgaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46486712 |
agtttatttcatggtgacaaaaactatacaataatggtaagtcaagaattatttgaacgtataatgttcaaaattcgagtcttgagcaacacacttgaat |
46486811 |
T |
|
| Q |
410 |
tagtgtggcttttttctttacaagttcatctttttaattgaggccgaccaacgtaaattctattccatcctccactaatttctctaaatcacccatgcaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46486812 |
tagtgtggcttttttctttacaagttcatctttttaattgaggccgaccaacgtaaattctattccatcctccactaatttctctatatcacccatgcaa |
46486911 |
T |
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| Q |
510 |
tgcacatgtattctagttcttctct |
534 |
Q |
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||||||||||||||||||||||||| |
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| T |
46486912 |
tgcacatgtattctagttcttctct |
46486936 |
T |
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