View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_5 (Length: 505)
Name: NF10949_low_5
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 58 - 505
Target Start/End: Original strand, 52476226 - 52476678
Alignment:
| Q |
58 |
ttcatcaacaagttacccttcctttctaagcaaaagactccaaattatatactgaaagttacttggatgatttgtataaccacctgaaggcccttgtaga |
157 |
Q |
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| T |
52476226 |
ttcatcaacaagttacccttcctttctaagcaaaagactccaaattatatactgaaagttacttggatgatttgtataaccacctgtaggcccttgtaga |
52476325 |
T |
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| Q |
158 |
atctggtccatggtaacctcaaagggaacgcaagcattgcttcagacacacgagcaacatccttgtgcatcattgctagttcatggctactctcaatgct |
257 |
Q |
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| T |
52476326 |
atctggtccatggtaacctcaaagggaacgcaagcattgcttcagacacacgagcaacatccttgtgcatcattgctagttcatggctactctcaatgct |
52476425 |
T |
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| Q |
258 |
tattagcatcttgcacatcgctttacaagctagctgcattacaaaaaattgttttggttcatgtacttccttcctcacatttat-----nnnnnnnnnnn |
352 |
Q |
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| T |
52476426 |
tattagcatcttgcacatcgctttacaagctagctgcattacaaaaaattgttttggttcatgtacttccttcctcacatttataaaaaaaaaaagcgtc |
52476525 |
T |
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| Q |
353 |
nnnngcgattatcaatttagttttaattgaacttttttactcgtaccacctaatcaatagtatgtgcattaatgacaatgaaaatagatcaatgtgtgaa |
452 |
Q |
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| T |
52476526 |
actttccattatcaatttagttttaattgaacttttttactcgtagcacctaatcaatagtatgtgcattaatgacaatgaaaatagatcaatgtgtgaa |
52476625 |
T |
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| Q |
453 |
atggtcgatcaagatatatagttattgtggacgaagggaatataacatgtacc |
505 |
Q |
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| T |
52476626 |
atggtcgatcaagatatatagttattgtggacgaagggaatataacatgtacc |
52476678 |
T |
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