View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10949_low_6 (Length: 501)
Name: NF10949_low_6
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10949_low_6 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 6374584 - 6374087
Alignment:
| Q |
1 |
cattcttgattctacactgcattttcaatcaatt-aggaaatttggaccatttatgatagaggctggtcacctcagtgcaaaactgtgatacaggccacc |
99 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
6374584 |
cattcttgattctacactgcattttcaatcaattgaggacatttggaccatttgtgatagaggatggtcacctcagtgcaaaactgtgatacatgccacc |
6374485 |
T |
|
| Q |
100 |
attgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaagactgtaaacctaattggcat----------------tca-atctg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
6374484 |
attgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaagactgtaaacctaattggcagcttgcaattaacaacatcatatctg |
6374385 |
T |
|
| Q |
183 |
cagtcaatctttcagtgaacaatacttccaaggtttccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaa |
282 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374384 |
cagtcaatctttcagggaacaacacttccaaggtttccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaa |
6374285 |
T |
|
| Q |
283 |
gcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatggagcagctaattcaagtacctcagcttgtgga |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6374284 |
gcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatggagcagctaattcaactacctcagcttgtgga |
6374185 |
T |
|
| Q |
383 |
ggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaatcttggaggttgcagtgcctatcatgctgagcgctttcagaagtaatgag |
482 |
Q |
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| T |
6374184 |
ggaatttttagggattgcaatgcaaatctgatttcttgttttgctgaaaatcttggaggttgcagtgcctatcatgctga--gctttcagcagtaatgag |
6374087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 432
Target Start/End: Original strand, 28716525 - 28716706
Alignment:
| Q |
251 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
350 |
Q |
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| T |
28716525 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaggttatttggtccccaccctactcaggatggatcaaatgcaacactgacg |
28716624 |
T |
|
| Q |
351 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
432 |
Q |
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| T |
28716625 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactctaatgccaatattctttcttgctttgcagaaaa |
28716706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 28716321 - 28716407
Alignment:
| Q |
64 |
tggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
150 |
Q |
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| T |
28716321 |
tggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagtacaatttggtactcaaggaatcaatgtagattt |
28716407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 432
Target Start/End: Original strand, 16490157 - 16490338
Alignment:
| Q |
251 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
350 |
Q |
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||||| ||| ||||||| || ||| ||||||||||||||||||| ||||||||||||||||| || || ||||||| |||||| || || |||||||| | |
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| T |
16490157 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaagttatttggtccccaccatactcaggatggatcaaatgcaacactgacg |
16490256 |
T |
|
| Q |
351 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
432 |
Q |
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| T |
16490257 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactcaaatgccaatattctttcttgctttgcagaaaa |
16490338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 16489953 - 16490039
Alignment:
| Q |
64 |
tggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
150 |
Q |
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| T |
16489953 |
tggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagaacaatttggtactcaaggaatcaatgtagattt |
16490039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 16144 - 16280
Alignment:
| Q |
20 |
cattttcaatcaatt-aggaaatttggaccatttatgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagca |
118 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||| ||||||| | |||||||| ||||||||||| || || | ||| | |||||||| || || |||| |
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| T |
16144 |
cattttcaatctattgaggaaatatggaccatttgtgatagatgttggtcaccacagtgcaaaacagtaattaaagcctctattgttaatattttcagca |
16243 |
T |
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| Q |
119 |
cagtttggtactcaaggaaccaatgcagatttcaaga |
155 |
Q |
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|| | |||||| | || |||||||||||||||||||| |
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| T |
16244 |
caatatggtacgctagaaaccaatgcagatttcaaga |
16280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 464
Target Start/End: Complemental strand, 24454160 - 24454040
Alignment:
| Q |
344 |
actgatggagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaatcttggaggtt |
443 |
Q |
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|||||||||||||||| ||||| ||| ||||| |||||||| || |||||||| | || | |||||||| ||||| ||||||||||| | || || | |
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| T |
24454160 |
actgatggagcagctacttcaattacttcagcctgtggagggatatttagggactctaactctaatctgctctcttgctttgctgaaaacttaggtggct |
24454061 |
T |
|
| Q |
444 |
gcagtgcctatcatgctgagc |
464 |
Q |
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||||||||||||||||||||| |
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| T |
24454060 |
gcagtgcctatcatgctgagc |
24454040 |
T |
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