View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10949_low_8 (Length: 461)

Name: NF10949_low_8
Description: NF10949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10949_low_8
NF10949_low_8
[»] chr7 (7 HSPs)
chr7 (257-456)||(25089665-25089865)
chr7 (242-456)||(25083872-25084087)
chr7 (275-456)||(25071001-25071180)
chr7 (275-456)||(25062295-25062477)
chr7 (361-425)||(25058166-25058230)
chr7 (54-136)||(40792180-40792261)
chr7 (141-192)||(25083819-25083870)
[»] chr5 (3 HSPs)
chr5 (59-137)||(24209525-24209603)
chr5 (50-136)||(20943463-20943549)
chr5 (54-100)||(19550435-19550481)
[»] chr2 (5 HSPs)
chr2 (50-128)||(37938647-37938725)
chr2 (53-137)||(15422552-15422636)
chr2 (50-128)||(11806091-11806169)
chr2 (65-136)||(31117298-31117369)
chr2 (70-137)||(40260576-40260645)
[»] chr3 (6 HSPs)
chr3 (54-139)||(24737305-24737390)
chr3 (50-99)||(7629631-7629680)
chr3 (70-136)||(19198891-19198957)
chr3 (63-136)||(12073828-12073901)
chr3 (81-136)||(16253435-16253490)
chr3 (69-136)||(11426101-11426170)
[»] scaffold0010 (1 HSPs)
scaffold0010 (63-137)||(32646-32722)
[»] chr8 (2 HSPs)
chr8 (70-136)||(2640730-2640796)
chr8 (61-137)||(15910110-15910188)
[»] chr6 (1 HSPs)
chr6 (66-136)||(2029462-2029534)
[»] chr1 (4 HSPs)
chr1 (59-136)||(3376305-3376382)
chr1 (63-136)||(43783108-43783181)
chr1 (70-115)||(45152424-45152469)
chr1 (77-137)||(51393810-51393870)
[»] scaffold0018 (1 HSPs)
scaffold0018 (63-137)||(180731-180805)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 257 - 456
Target Start/End: Original strand, 25089665 - 25089865
Alignment:
Q  257 ttctatgaatttggaatcatatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttcc-gtcaagagaaaccatat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25089665 ttctatgaatttggaatcatatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttcccgtcaagagaaaccatat 25089764  T
Q  356 cataaggtgtatcttctccaaattcagctggcattaacttccaatatagacttggttcccactctgcttcctttatgacattcaatatctcctttgctac 455  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  25089765 cataaggtgtatcttctccaaattcagctggcattaacttacaatatagacttggttcccactctgctttctttatgacattcaatatctcctttgttac 25089864  T
Q  456 t 456  Q
    |    
T  25089865 t 25089865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 242 - 456
Target Start/End: Original strand, 25083872 - 25084087
Alignment:
Q  242 caatttccataaggattctatgaatttggaatcatatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttccg-t 340  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||| | || ||||||  |    
T  25083872 caatttccataaggattctatgaatttggaataatatatcaaggccactctacaccatcaggaaaaggcacatcggagaaattaatatttatcttcccat 25083971  T
Q  341 caagagaaaccatatcataaggtgtatcttctccaaattcagctggcattaacttccaatatagacttggttcccactctgcttcctttatgacattcaa 440  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  25083972 caagagaaaccatatcataaggagaatcttctccaaattcagctggcattaacttccaatatagacttggtttccactctgcttcttcgatgacattcaa 25084071  T
Q  441 tatctcctttgctact 456  Q
    |||||| |||| ||||    
T  25084072 tatctcttttgttact 25084087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 25071001 - 25071180
Alignment:
Q  275 atatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttccg-tcaagagaaaccatatcataaggtgtatcttctc 373  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||   |||||||||  ||||||| ||||||||||||||||| ||||||||    
T  25071001 atatatcaaggccaatctacatcttcagggaaaggcacattggagaaattaa---ttgtcttcccatcaagagtaaccatatcataaggtgaatcttctc 25071097  T
Q  374 caaattcagctggcattaacttccaatatagacttggttcccactctgcttcctttatgacattcaatatctcctttgctact 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  25071098 caaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttact 25071180  T

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Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 25062295 - 25062477
Alignment:
Q  275 atatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttccg-tcaagagaaaccatatcataaggtgtatcttctc 373  Q
    |||||||||||||| |||||| ||| ||| |||||||| |||||| ||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||    
T  25062295 atatatcaaggccagtctacatcttcagggaaaggcacgttggagtaattaacagttgtcttcccatcaagagaaactatatcataaggtgaatcttctc 25062394  T
Q  374 caaattcagctggcattaacttccaatatagacttggttcccactctgcttcctttatgacattcaatatctcctttgctact 456  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||| ||||    
T  25062395 caaattcagttggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttact 25062477  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 25058166 - 25058230
Alignment:
Q  361 ggtgtatcttctccaaattcagctggcattaacttccaatatagacttggttcccactctgcttc 425  Q
    |||| |||||||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||    
T  25058166 ggtgaatcttctccaaattcaactggcattgtcttccaatatagatttggttcccactctgcttc 25058230  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 40792261 - 40792180
Alignment:
Q  54 ttttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||  ||| ||||||||||||    
T  40792261 tttttttagtgaatcataaatgtatatttgtttgtatgatatttgtgctgatat-aatttatctctctgtgtttgtagggatg 40792180  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 25083819 - 25083870
Alignment:
Q  141 acatagggaaagaccatgatcaagttttgctcacccatctattattgaacat 192  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  25083819 acatagtgaaaaaccatgatcaagttttgctcacccatctaatattgaacat 25083870  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 24209603 - 24209525
Alignment:
Q  59 ttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatga 137  Q
    |||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||| |||| |||||||||||||    
T  24209603 ttagtgaatcataaatgtatatttgtttgtatgatacttatgttgatataaatttgtctctttgtgtttgtagggatga 24209525  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 20943463 - 20943549
Alignment:
Q  50 cttattttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||| ||| ||||||||||||||||  ||| |||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||    
T  20943463 cttaattttttagtggatcataaataaatagttgtttgtatgatacttgtgctgatataaatttgtctctttgtgtttgcagggatg 20943549  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 19550435 - 19550481
Alignment:
Q  54 ttttgttagtggatcataaatgtatatttgtttgtatgatacttgtg 100  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||||    
T  19550435 tttttttagtggatcataaatgtatagttgtttctatgatacttgtg 19550481  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 37938725 - 37938647
Alignment:
Q  50 cttattttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttg 128  Q
    |||||||| ||||||||||| |||||||||||||||||||  |||||||||||  |||||||||||||| |||| ||||    
T  37938725 cttatttttttagtggatcacaaatgtatatttgtttgtaatatacttgtgctggtataaatttgtctctttgtgtttg 37938647  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 15422636 - 15422552
Alignment:
Q  53 attttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatga 137  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||   || ||||||||||||||| |||| |||| | ||||||    
T  15422636 atttttttagtggttcataaatgtatatttgtttgtatgatactttccctgatataaatttgtctctttgtgtttgcaaggatga 15422552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 11806169 - 11806091
Alignment:
Q  50 cttattttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttg 128  Q
    |||||||| |||||| ||| |||||||||| ||||| ||||||||||| |||| ||||||||||||||| |||| ||||    
T  11806169 cttatttttttagtgaatcgtaaatgtatagttgttcgtatgatacttatgctgatataaatttgtctctttgtgtttg 11806091  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 31117369 - 31117298
Alignment:
Q  65 gatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||| |||||||||| |||||||||| ||||||||||| |||||||||||| || |||| |||| |||||||    
T  31117369 gatcgtaaatgtatagttgtttgtataatacttgtgctgatataaatttgtttctttgtgtttgcagggatg 31117298  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 40260576 - 40260645
Alignment:
Q  70 taaatgtatatttgtttgtatgatact--tgtgctaatataaatttgtctccttgtatttgtagggatga 137  Q
    |||||||||| || |||||||||||||  |||||| ||||||||||||||| |||| |||| | ||||||    
T  40260576 taaatgtatagttttttgtatgatacttgtgtgctgatataaatttgtctctttgtgtttgcaaggatga 40260645  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 24737390 - 24737305
Alignment:
Q  54 ttttgttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatgatt 139  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||| |||| | | |||||| | || |||||||||||||||    
T  24737390 tttttttagcggatcataaatgtatatttgtttgtatgattcttgtgctgatattattatgtctcttagtgtttgtagggatgatt 24737305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 7629631 - 7629680
Alignment:
Q  50 cttattttgttagtggatcataaatgtatatttgtttgtatgatacttgt 99  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7629631 cttatttttttagtggatcataaatgtatagttgtttgtatgatacttgt 7629680  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 19198891 - 19198957
Alignment:
Q  70 taaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||| || |||| |||| |||||||    
T  19198891 taaatgtatagttgtttgtataatacttgtgctgatataaatttgtttctttgtgtttgcagggatg 19198957  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 12073828 - 12073901
Alignment:
Q  63 tggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||| |||||||||| |||||||||| ||| ||||||| |||||||||||| || |||| |||  |||||||    
T  12073828 tggatcgtaaatgtatagttgtttgtataatatttgtgctgatataaatttgtttctttgtgtttacagggatg 12073901  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 16253490 - 16253435
Alignment:
Q  81 ttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    ||||||||||||||||| |  | ||||||||||||||| |||| ||||||||||||    
T  16253490 ttgtttgtatgatacttttattgatataaatttgtctcattgtgtttgtagggatg 16253435  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 11426170 - 11426101
Alignment:
Q  69 ataaatgtatatttgtttgtatgatacttgtg--ctaatataaatttgtctccttgtatttgtagggatg 136  Q
    ||||||||||| || |||||||||||  ||||  |||||||||||||||||| |||| |||| |||||||    
T  11426170 ataaatgtatagttttttgtatgatatgtgtgtgctaatataaatttgtctctttgtgtttgcagggatg 11426101  T

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Target: scaffold0010 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 32722 - 32646
Alignment:
Q  63 tggatcataaatgtatatttgtttgtatgatacttgtgctaatataa--atttgtctccttgtatttgtagggatga 137  Q
    |||||||||||||| || |||||||||| ||||||||||| ||||||  |||||| || ||||||||||||||||||    
T  32722 tggatcataaatgtttagttgtttgtataatacttgtgctgatataaatatttgtttctttgtatttgtagggatga 32646  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 2640730 - 2640796
Alignment:
Q  70 taaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||||||| ||||||||||||||||| || | ||||||||||||||| |||| |||| |||||||    
T  2640730 taaatgtatagttgtttgtatgatacttatgatgatataaatttgtctctttgtgtttgcagggatg 2640796  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 15910188 - 15910110
Alignment:
Q  61 agtggatcataaatgtatatttgtttgtatgatacttgtg--ctaatataaatttgtctccttgtatttgtagggatga 137  Q
    |||| ||| |||||||||| || |||||||||||||||||  |||||||||||||||||| |||| |||| ||| ||||    
T  15910188 agtgaatcgtaaatgtatagttttttgtatgatacttgtgtgctaatataaatttgtctctttgtgtttgcaggaatga 15910110  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 2029462 - 2029534
Alignment:
Q  66 atcataaatgtatatttgtttgtatgatact--tgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||||||||||| || |||||||||||||  |||||| ||||||||||||||| |||| |||| |||||||    
T  2029462 atcataaatgtatagttttttgtatgatacttgtgtgctgatataaatttgtctctttgtgtttgcagggatg 2029534  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 3376382 - 3376305
Alignment:
Q  59 ttagtggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||||||| | |||||||| |||||||||| |||| ||||||||||||| ||||| || |||| |||| |||||||    
T  3376382 ttagtggatcgttaatgtatagttgtttgtataatacatgtgctaatataattttgtttctttgtgtttgcagggatg 3376305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 43783181 - 43783108
Alignment:
Q  63 tggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatg 136  Q
    |||||| ||||| |||| |||||||||| ||||||||||| |||||||||||| || |||| |||| |||||||    
T  43783181 tggatcgtaaatttataattgtttgtataatacttgtgctgatataaatttgtttctttgtgtttgcagggatg 43783108  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 45152424 - 45152469
Alignment:
Q  70 taaatgtatatttgtttgtatgatacttgtgctaatataaatttgt 115  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||    
T  45152424 taaatgtatagttgtttgtataatacttgtgctgatataaatttgt 45152469  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 51393810 - 51393870
Alignment:
Q  77 atatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatga 137  Q
    ||||||||||| |||||||||||||| |||| | | |||||| |||| |||||||||||||    
T  51393810 atatttgtttgcatgatacttgtgctgatattattgtgtctctttgtgtttgtagggatga 51393870  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 180805 - 180731
Alignment:
Q  63 tggatcataaatgtatatttgtttgtatgatacttgtgctaatataaatttgtctccttgtatttgtagggatga 137  Q
    |||||| |||||||||| |||||||||| |||||| |||| |||||||||||| || || | |||| ||||||||    
T  180805 tggatcgtaaatgtataattgtttgtataatacttctgctgatataaatttgtttctttctgtttgcagggatga 180731  T

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