View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1094_high_12 (Length: 202)
Name: NF1094_high_12
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1094_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 20338083 - 20338206
Alignment:
| Q |
1 |
cctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgatttaggtgtttgagta |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338083 |
cctaccatcacgtcaccgaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgatttaggtgtttgagta |
20338182 |
T |
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| Q |
101 |
agtcacatgactctctcatctctg |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
20338183 |
agtcacatgactctctcatctctg |
20338206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 20127051 - 20126929
Alignment:
| Q |
2 |
ctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaa |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
20127051 |
ctaccaccacgtcaccaaaattcattcctaacgagcacatccccgatttgctctctttacttcttgtcaaatctctccttcgatttaggtgcttgagtaa |
20126952 |
T |
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| Q |
102 |
gtcacatgactctctcatctctg |
124 |
Q |
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||||| ||||||||||||||||| |
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| T |
20126951 |
gtcacttgactctctcatctctg |
20126929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20141732 - 20141610
Alignment:
| Q |
1 |
cctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgatttaggtgtttgagta |
100 |
Q |
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|||||||||| | ||||||||||||| ||||||||||| ||| ||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
20141732 |
cctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagta |
20141633 |
T |
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| Q |
101 |
agtcacatgactctctcatctct |
123 |
Q |
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|||||| |||||||||||||||| |
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| T |
20141632 |
agtcacttgactctctcatctct |
20141610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 20134230 - 20134107
Alignment:
| Q |
1 |
cctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgatttaggtgtttgagta |
100 |
Q |
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||||||| || |||||||||||||| ||||||||| ||||||||| | ||||| ||| | ||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
20134230 |
cctaccaacatgtcaccaaaattcaatcctaacgaccacatccccaacttgctttccctccttcccgtcaaatctcttcttcgatttaggtgcttgagta |
20134131 |
T |
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| Q |
101 |
agtcacatgactctctcatctctg |
124 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
20134130 |
agccacatgactctctcatctctg |
20134107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 20375362 - 20375296
Alignment:
| Q |
56 |
ccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctc |
122 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20375362 |
ccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagtcacatgactctctcatctc |
20375296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 20362066 - 20361999
Alignment:
| Q |
55 |
tccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctc |
122 |
Q |
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||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20362066 |
tccttgcttcccgtcaaatccctccttcgatttaggtgcttgagtaagtcacatgactctctcatctc |
20361999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 20351305 - 20351372
Alignment:
| Q |
55 |
tccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctc |
122 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
20351305 |
tccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagttgcatgactctctcatctc |
20351372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 20407458 - 20407523
Alignment:
| Q |
58 |
ttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
123 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |
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| T |
20407458 |
ttacttcccgtcaaatcactccttcgatttaggtgcttaagtaagtcatatgactctctcatctct |
20407523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 20360396 - 20360451
Alignment:
| Q |
67 |
gtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctc |
122 |
Q |
| |
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||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20360396 |
gtcaaatttctacttcgatttaggtgcttgagtaagtcacatgactctctcatctc |
20360451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 20442137 - 20442199
Alignment:
| Q |
61 |
cttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
123 |
Q |
| |
|
||||| |||||||| ||| || |||||||||| || ||||||||| ||||||||||||||||| |
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| T |
20442137 |
cttcccgtcaaatcactcatttgatttaggtgcttaagtaagtcatatgactctctcatctct |
20442199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 20139235 - 20139194
Alignment:
| Q |
67 |
gtcaaatctctccttcgatttaggtgtttgagtaagtcacat |
108 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
20139235 |
gtcaaatctctcctttgatttaggtgcttgagtaagtcacat |
20139194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 20423097 - 20423152
Alignment:
| Q |
68 |
tcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
123 |
Q |
| |
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||||||| |||||||||| ||||| || ||||||||| ||||||||||||||||| |
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|
| T |
20423097 |
tcaaatcattccttcgattcaggtgcttaagtaagtcatatgactctctcatctct |
20423152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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