View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1094_high_2 (Length: 446)

Name: NF1094_high_2
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1094_high_2
NF1094_high_2
[»] chr4 (11 HSPs)
chr4 (41-418)||(18420713-18421087)
chr4 (263-346)||(10116264-10116347)
chr4 (239-346)||(12410304-12410412)
chr4 (147-285)||(11251987-11252125)
chr4 (239-326)||(11923998-11924086)
chr4 (270-330)||(13933012-13933072)
chr4 (290-346)||(13305495-13305551)
chr4 (290-346)||(20847122-20847178)
chr4 (276-335)||(20749883-20749942)
chr4 (249-285)||(20749943-20749979)
chr4 (287-326)||(20881204-20881244)
[»] scaffold0115 (1 HSPs)
scaffold0115 (56-343)||(41377-41664)
[»] chr5 (5 HSPs)
chr5 (44-346)||(37277562-37277865)
chr5 (239-346)||(37275479-37275586)
chr5 (151-346)||(20846540-20846734)
chr5 (249-335)||(34178897-34178982)
chr5 (269-330)||(30191021-30191081)
[»] scaffold0111 (1 HSPs)
scaffold0111 (44-330)||(28360-28643)
[»] chr6 (13 HSPs)
chr6 (60-346)||(12478469-12478751)
chr6 (42-346)||(24216831-24217137)
chr6 (128-346)||(14796533-14796746)
chr6 (153-281)||(16165785-16165911)
chr6 (241-346)||(12484665-12484770)
chr6 (153-296)||(17827215-17827356)
chr6 (259-339)||(30754932-30755012)
chr6 (268-342)||(12331825-12331899)
chr6 (245-346)||(6777673-6777774)
chr6 (289-346)||(17912746-17912803)
chr6 (244-318)||(19841512-19841587)
chr6 (312-346)||(17908035-17908069)
chr6 (251-347)||(14487400-14487497)
[»] chr7 (16 HSPs)
chr7 (105-346)||(17842845-17843075)
chr7 (145-335)||(15010849-15011036)
chr7 (248-346)||(15817830-15817928)
chr7 (205-346)||(8250183-8250324)
chr7 (251-346)||(17910188-17910283)
chr7 (251-346)||(26426794-26426888)
chr7 (131-331)||(20146809-20147007)
chr7 (56-197)||(20376494-20376634)
chr7 (249-346)||(19432415-19432513)
chr7 (259-329)||(17999850-17999920)
chr7 (290-346)||(6461677-6461733)
chr7 (244-310)||(16206275-16206341)
chr7 (268-346)||(17151323-17151401)
chr7 (145-184)||(18366037-18366076)
chr7 (299-345)||(6210835-6210880)
chr7 (59-124)||(18083396-18083459)
[»] chr8 (8 HSPs)
chr8 (148-346)||(17124452-17124649)
chr8 (149-346)||(14400178-14400373)
chr8 (260-326)||(24270290-24270356)
chr8 (268-346)||(15062017-15062096)
chr8 (268-346)||(16216040-16216119)
chr8 (245-329)||(17984480-17984565)
chr8 (251-328)||(23863524-23863601)
chr8 (245-346)||(16227896-16227998)
[»] chr2 (4 HSPs)
chr2 (145-346)||(27401846-27402045)
chr2 (148-209)||(34876146-34876207)
chr2 (249-329)||(18332231-18332311)
chr2 (44-100)||(20718850-20718906)
[»] scaffold0417 (1 HSPs)
scaffold0417 (148-346)||(1797-1991)
[»] chr3 (9 HSPs)
chr3 (291-405)||(6808644-6808758)
chr3 (131-308)||(25487683-25487856)
chr3 (261-330)||(19978673-19978742)
chr3 (254-346)||(30084128-30084220)
chr3 (290-346)||(17385073-17385129)
chr3 (245-284)||(17760693-17760732)
chr3 (245-284)||(19062013-19062052)
chr3 (244-280)||(6817527-6817563)
chr3 (269-317)||(7254471-7254519)
[»] scaffold0613 (1 HSPs)
scaffold0613 (249-341)||(2915-3007)
[»] scaffold0431 (1 HSPs)
scaffold0431 (249-330)||(13972-14053)
[»] scaffold0014 (1 HSPs)
scaffold0014 (269-346)||(201830-201906)
[»] scaffold1869 (1 HSPs)
scaffold1869 (260-346)||(515-601)
[»] scaffold0338 (1 HSPs)
scaffold0338 (268-345)||(18572-18650)
[»] scaffold0086 (1 HSPs)
scaffold0086 (248-330)||(11339-11421)
[»] scaffold0123 (1 HSPs)
scaffold0123 (239-321)||(33054-33136)
[»] scaffold1924 (1 HSPs)
scaffold1924 (257-330)||(1028-1101)
[»] chr1 (1 HSPs)
chr1 (261-330)||(11843518-11843587)
[»] scaffold0035 (2 HSPs)
scaffold0035 (246-309)||(64358-64421)
scaffold0035 (289-346)||(71312-71370)
[»] scaffold0186 (2 HSPs)
scaffold0186 (153-209)||(10744-10801)
scaffold0186 (238-331)||(10807-10899)
[»] scaffold0032 (1 HSPs)
scaffold0032 (153-202)||(80389-80438)
[»] scaffold0097 (1 HSPs)
scaffold0097 (44-100)||(22687-22743)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 41 - 418
Target Start/End: Complemental strand, 18421087 - 18420713
Alignment:
Q  41 gagtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacatactactgagtgatagtctcatcaaacataaaataaatgata 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  18421087 gagtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacatact---gagtgatagtctcatcaaacataaaataaatgata 18420991  T
Q  141 aaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18420990 aaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagctagtcctcaagcatactcacaagcaaggtca 18420891  T
Q  241 aaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatat 340  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18420890 aaacaactaatcctgcaagccgtctatccattcatgcaaataggccgacggtcaaccaaacgaccactggaggttagataatattccacaaataatatat 18420791  T
Q  341 aatcaacttgaaagcaaaaccgtatattcgtattcaatgatcaactaaacacttaattaaatcatgcacgatggaatt 418  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  18420790 aatcaacttgaaagcaaaatcgtatattcgtattcaatgatcaactaaacacttaattaaatcatgcacaatgaaatt 18420713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 10116347 - 10116264
Alignment:
Q  263 tctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  10116347 tctatccattcatacaaataggcagacggtcaaccaaacgaccattggaggttagataacattccgcaaataatatataatcaa 10116264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 12410412 - 12410304
Alignment:
Q  239 caaaacaact-aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataata 337  Q
    |||||||||| ||||||||||| |||||| |||||| ||||||||||| | |||| ||| ||||||||||| | ||||||||||||||||||| | || |    
T  12410412 caaaacaactcaatcctgcaagtcgtctaaccattcgtacaaataggcaggcggttaaccaaacgaccactaggggttagataatattccacacaaaaaa 12410313  T
Q  338 tataatcaa 346  Q
    |||||||||    
T  12410312 tataatcaa 12410304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 11251987 - 11252125
Alignment:
Q  147 cgacatcctaatcagagccctaaactaagactccaa-agaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaaca 245  Q
    |||||||||||||||||||||| ||||| ||||||| | ||| || | |||| ||| || |||  |||||||||| ||||||||||| || | |||| ||    
T  11251987 cgacatcctaatcagagccctagactaaaactccaacataaaggaaatgaggtagcatccaagacagtcctcaagcatactcacaagtaaag-caaagca 11252085  T
Q  246 actaatcctgcaagccgtctatccattcatacaaataggc 285  Q
    ||||||||||||| || ||||  |||||||||||||||||    
T  11252086 actaatcctgcaaaccatctactcattcatacaaataggc 11252125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 11924086 - 11923998
Alignment:
Q  239 caaaacaact-aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattc 326  Q
    |||||||||| ||||||||||||||||||   |||||||||||||||| |  ||||||| ||||||||||||| ||||||||| |||||    
T  11924086 caaaacaactcaatcctgcaagccgtctacttattcatacaaataggcagcaggtcaaccaaacgaccactgggggttagatattattc 11923998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 13933012 - 13933072
Alignment:
Q  270 attcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||||||||||||| | |||||||| ||||||||||||| |||||||||||||| ||||    
T  13933012 attcatacaaataggcaggcggtcaaccaaacgaccactgggggttagataatatttcaca 13933072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 13305551 - 13305495
Alignment:
Q  290 ggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||  |||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  13305551 ggtcaaccgaacgaccactagagattagattatatttcacaaataatatataatcaa 13305495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 20847122 - 20847178
Alignment:
Q  290 ggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||  |||||||| ||| |||||||| |||||||| |||||||||||||||||    
T  20847122 ggtcaaccgaacgaccattgggggttagattatattccaaaaataatatataatcaa 20847178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 20749942 - 20749883
Alignment:
Q  276 acaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataa 335  Q
    |||||||||| | |||||||| |||||| |||| |||||||| | |||||||||||||||    
T  20749942 acaaataggcaggcggtcaaccaaacgatcactcgaggttagtttatattccacaaataa 20749883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 20749979 - 20749943
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggc 285  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20749979 aatcctgcaagccgtctacccattcgtacaaataggc 20749943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 20881204 - 20881244
Alignment:
Q  287 gacggtcaactaaacgaccactg-gaggttagataatattc 326  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  20881204 gacggtcaaccaaacgaccactgagaggttagataatattc 20881244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 56 - 343
Target Start/End: Complemental strand, 41664 - 41377
Alignment:
Q  56 atgtatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa-cat--aaaataaatgataaaataccgaca 151  Q
    |||||||||||||| |||||||||| |||| || ||  | ||||||||   |||||||| |||||||||| |||  ||||||||||| |||| || ||||    
T  41664 atgtatcataatacatcaccaaatataaatctcaaactttaacatact---gagtgataatctcatcaaaacatgaaaaataaatgaaaaaagactgaca 41568  T
Q  152 tcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaat 251  Q
     |||||||||||||||||||||||| | |||||||||||||||||| |||| |||||| |||||||||| |||||| ||||||| | |||| ||||||||    
T  41567 -cctaatcagagccctaaactaagaattcaaagaaaagagacgaggtagctccaaagctagtcctcaagcatactcccaagcaaaggcaaagcaactaat 41469  T
Q  252 cctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataat 343  Q
    |||| ||| ||||||  ||||||||||||||| | | |||||||| |||||||||||   |||||||| |||||||| ||||||||||||||    
T  41468 cctgtaagacgtctactcattcatacaaatagacaggcggtcaaccaaacgaccactacgggttagattatattccataaataatatataat 41377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 44 - 346
Target Start/End: Original strand, 37277562 - 37277865
Alignment:
Q  44 tagccatatcatatgtatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa-cataaaa--taaatgat 139  Q
    ||||||| ||| |||||||||||||| |||| ||||| |||| || ||||||||||||||   |||| ||| |||||||||| ||| |||  ||||||||    
T  37277562 tagccatgtcacatgtatcataatacatcactaaatataaatctcaaatctcaacatact---gagtaataatctcatcaaatcatgaaacataaatgat 37277658  T
Q  140 aaaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtc 239  Q
    |||  || | |||| |||||||  |||||||||||||||||| | ||||||||||||| || | |||||| ||||| |||| ||||||||||||||   |    
T  37277659 aaacgactggcatcttaatcagctccctaaactaagactccacaaaaaagagacgaggtaggtccaaagctagtccacaagcatactcacaagcaaaagc 37277758  T
Q  240 aaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatata 339  Q
    ||| ||||||||| ||||||||||||| |||||||||||||||||  |||| || |  ||||||||| ||  ||||||||||||||||| ||||||  ||    
T  37277759 aaagcaactaatcgtgcaagccgtctacccattcatacaaataggaagacgctccagcaaacgaccattgatggttagataatattccaaaaataaagta 37277858  T
Q  340 taatcaa 346  Q
    |||||||    
T  37277859 taatcaa 37277865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 37275479 - 37275586
Alignment:
Q  239 caaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatat 338  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||| |||| || || ||||||||| ||  ||||||||||||||||| ||||||  |    
T  37275479 caaagcaactaatcgtgcaagccgtctacccattcatacaaataggcagacgctccaccaaacgaccattgatggttagataatattccaaaaataaagt 37275578  T
Q  339 ataatcaa 346  Q
    ||||||||    
T  37275579 ataatcaa 37275586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 346
Target Start/End: Complemental strand, 20846734 - 20846540
Alignment:
Q  151 atcctaatcagagccctaaactaagact-ccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaacta 249  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||| | || ||||||| |||||||||||||| |  || | || ||    
T  20846734 atcctaatcagagccctaaactaagactcccaaagaaaa-agacaaggtagctccaaatctag-cctcaagcatactcacaagcaaagcaaagaaaatta 20846637  T
Q  250 atcctgcaagccgtctatccattcatacaaat-aggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    ||| |||| |||||||| |||| ||||| ||| |||    || ||||| ||||||||||||| |||||||||| |||| |||| |||  |||||||||    
T  20846636 atcatgcacgccgtctacccatccatacgaataaggtatgcgatcaaccaaacgaccactgg-ggttagataacattcaacaattaaagtataatcaa 20846540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 34178982 - 34178897
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataa 335  Q
    ||||||||||  |||||||||||||||| |||||||| || ||||||  ||||||||| ||| |||||||| |||||||||||||||    
T  34178982 aatcctgcaattcgtctatccattcatagaaataggcagatggtcaagcaaacgaccaatgg-ggttagattatattccacaaataa 34178897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 30191081 - 30191021
Alignment:
Q  269 cattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    ||||| ||||||||||| |||||||||| ||||||||||| ||||||| || ||||||||||    
T  30191081 cattcgtacaaataggcagacggtcaaccaaacgaccact-gaggttatattatattccaca 30191021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 330
Target Start/End: Original strand, 28360 - 28643
Alignment:
Q  44 tagccatatcatatgtatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa-cat-aaaataaatgata 140  Q
    ||||||| ||| |||||||||||||  |||||||| | |||| || ||||| |||||||||   ||||||| |||||||||| ||| |||||||| || |    
T  28360 tagccatgtcacatgtatcataatatatcaccaaaaataaatctcaaatcttaacatacta---agtgataatctcatcaaaacatgaaaataaacgaca 28456  T
Q  141 aaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtca 240  Q
    ||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||| |||| |||| |||||  || |||||||   |||||||||||| | ||    
T  28457 aaagaccgacaccctgatcagagccctagactaagactccaaagcaaagagatgaggtagctccaaagatag-cctcaagtggactcacaagcaaag-ca 28554  T
Q  241 aaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    || |||||||||||||||||| | || |||||||||||||||||| | || ||||| ||||||||||||| ||||||||| || ||||||    
T  28555 aagcaactaatcctgcaagccatttacccattcatacaaataggcaggcgatcaaccaaacgaccactgg-ggttagatattaatccaca 28643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 60 - 346
Target Start/End: Complemental strand, 12478751 - 12478469
Alignment:
Q  60 atcataatacttcaccaaataaaatatccaatctcaacatactactgagtgatagtctcatcaaacat--aaaataaatgataaaataccgacatcctaa 157  Q
    |||||||||| ||||||||  |||| |||||||||||||| ||   ||||||||||||||  | ||||  ||||||||||| | || ||||||| |||||    
T  12478751 atcataatacatcaccaaaataaatctccaatctcaacatgct---gagtgatagtctcaaaagacatgaaaaataaatgacataagaccgaca-cctaa 12478656  T
Q  158 tcagagccctaaactaagactcc-aaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaatcctgc 256  Q
    ||||||||||||||||||||||| |||| ||| ||| |||| ||||||||||| || ||||| | ||||||||||||||  ||||| |||||||||||||    
T  12478655 tcagagccctaaactaagactcccaaagcaaaaagatgaggtagcttcaaagctag-cctcatgcatactcacaagcaa--tcaaagcaactaatcctgc 12478559  T
Q  257 aagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||  ||| |||||||||| ||||| | | || ||||| ||||||||||||| || ||||||| | ||||| || ||  |||||||||    
T  12478558 aagccagctacccattcatacgaatagacaggcgttcaaccaaacgaccactgggggctagataacaatccaccaaaaaagtataatcaa 12478469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 346
Target Start/End: Original strand, 24216831 - 24217137
Alignment:
Q  42 agtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacatactactgagtgatag-tctcatcaa-acataaaataaat-ga 138  Q
    ||||| ||| ||||||||| |||||||| | |||||||||||| || |||||||||||| |   |||||| |  |||||| || |||||||| |||  ||    
T  24216831 agtagtcatgtcatatgtaccataatacataaccaaataaaatctcaaatctcaacataat---gagtgacaaatctcataaagacataaaaaaaaacga 24216927  T
Q  139 taaaataccgacatcctaatcagagcccta-aactaagactccaa--agaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaa 235  Q
     |||| ||||||| |||||||| || |||  ||||| ||||||||  | ||| || | |||| |||| |||||| |||||||||| |||| |||||||||    
T  24216928 caaaagaccgacaccctaatcaaagtccttcaacta-gactccaagcataaaggaaatgaggtagctccaaagctagtcctcaagcatacccacaagcaa 24217026  T
Q  236 ggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataa 335  Q
       |||| | ||||||||||||||||||||| | || | | ||||||||| | |||||||| ||||||||||||| |||||||| || ||||||||||||    
T  24217027 aagcaaagcgactaatcctgcaagccgtctacctatacttccaaataggctggcggtcaaccaaacgaccactgggggttagattattttccacaaataa 24217126  T
Q  336 tatataatcaa 346  Q
    |||||||||||    
T  24217127 tatataatcaa 24217137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 346
Target Start/End: Original strand, 14796533 - 14796746
Alignment:
Q  128 aaaataaatgataaaataccgacatcctaatcagagccctaaactaagact-ccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatact 226  Q
    ||||||||||| | ||  |||||| |||||||||||||||||||||||||| |||||| |||||||| ||| ||||  |||  |   ||||||| |||||    
T  14796533 aaaataaatgacataagtccgacaacctaatcagagccctaaactaagacttccaaagcaaagagacaaggtagctaaaaaagatagcctcaagcatact 14796632  T
Q  227 cacaagcaaggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattc 326  Q
    ||| ||||| |      ||||||||||||||||||||| | | ||||||| |||||||  || ||| ||| |||||||||| ||||||||||||| | ||    
T  14796633 cacgagcaaag------caactaatcctgcaagccgtcgaccaattcataaaaataggtagagggtaaaccaaacgaccaccggaggttagataacagtc 14796726  T
Q  327 cacaaataatatataatcaa 346  Q
    |||||||||  |||||||||    
T  14796727 cacaaataaagtataatcaa 14796746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 16165911 - 16165785
Alignment:
Q  153 cctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaatc 252  Q
    ||||| |||||||| | ||||||||||||||| ||||| |||||| ||||||||||| || |||| |  |||||||||||||| | |||||  |||||||    
T  16165911 cctaaacagagcccgacactaagactccaaagcaaagaaacgaggtagcttcaaagccag-cctccaacatactcacaagcaaag-caaaaacactaatc 16165814  T
Q  253 ctgcaagccgtctatccattcatacaaat 281  Q
    || |||| |||||||||||||||||||||    
T  16165813 ctacaagtcgtctatccattcatacaaat 16165785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 12484665 - 12484770
Alignment:
Q  241 aaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatat 340  Q
    ||||||||||||||||| | |||||| ||||||||| |||||||| |||||||||| |||| |||||  | |||||||||| ||||||||| |||  |||    
T  12484665 aaacaactaatcctgcatgtcgtctacccattcataaaaataggcagacggtcaaccaaacaaccacatggggttagataacattccacaagtaaagtat 12484764  T
Q  341 aatcaa 346  Q
    ||||||    
T  12484765 aatcaa 12484770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 17827356 - 17827215
Alignment:
Q  153 cctaatcagagccctaaactaagactcc-aaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaat 251  Q
    |||||||| |||||||| |||||||||| |||| |||||||||||| |||| ||| |  || ||||||| ||| ||||||||||  |||||  |||||||    
T  17827356 cctaatcaaagccctaagctaagactcccaaagcaaagagacgaggtagctccaaggttag-cctcaagcataatcacaagcaa--tcaaagaaactaat 17827260  T
Q  252 cctgcaagccgtctatccattcatacaaataggccgacggtcaac 296  Q
    ||||||||  |||||  ||||||||||||||||| ||||||||||    
T  17827259 cctgcaagttgtctactcattcatacaaataggcagacggtcaac 17827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 30755012 - 30754932
Alignment:
Q  259 gccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatata 339  Q
    |||| ||| ||||| || ||||||||| |||||||||  ||||||||||| ||||||||||||||||||||| | ||||||    
T  30755012 gccgcctacccatttattcaaataggcagacggtcaatcaaacgaccacttgaggttagataatattccacataaaatata 30754932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 12331899 - 12331825
Alignment:
Q  268 ccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataa 342  Q
    |||||||||||||| ||  | |||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||    
T  12331899 ccattcatacaaatgggtaggcggtcaactaaacgaccactgg-ggttagattatattccacataataaaatataa 12331825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 6777673 - 6777774
Alignment:
Q  245 aactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatc 344  Q
    ||||| || |||| |||||||||||||  |||  ||||||| | ||||||||| |||||||||| | |||||||||| |||| |||| |||  |||||||    
T  6777673 aactactcatgcacgccgtctatccatctatatgaataggcaggcggtcaactgaacgaccactaggggttagataacattcaacaattaaagtataatc 6777772  T
Q  345 aa 346  Q
    ||    
T  6777773 aa 6777774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 17912746 - 17912803
Alignment:
Q  289 cggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||| |||| |||||| | |||||||  ||||||||||||||||||||||||||    
T  17912746 cggtcaaccaaacaaccactaggggttagaatatattccacaaataatatataatcaa 17912803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 19841512 - 19841587
Alignment:
Q  244 caactaatcctgcaagccgtctatccattcatacaaat-aggccgacggtcaactaaacgaccactggaggttaga 318  Q
    ||||||||||||||  |||||||||||||||||  ||| ||||  |||||| || ||||||||||||| |||||||    
T  19841512 caactaatcctgcacaccgtctatccattcataagaataaggcatacggtcgaccaaacgaccactgggggttaga 19841587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 17908035 - 17908069
Alignment:
Q  312 ggttagataatattccacaaataatatataatcaa 346  Q
    |||||||| ||||||||||||||||||||||||||    
T  17908035 ggttagattatattccacaaataatatataatcaa 17908069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 14487497 - 14487400
Alignment:
Q  251 tcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatcaac 347  Q
    ||||||| |||||||| |||||||||||||||||  | |||| ||| ||| | ||||| |  ||||||||||||| |||| || || |||||||||||    
T  14487497 tcctgcacgccgtctacccattcatacaaataggtaggcggttaaccaaatggccactaggagttagataatatttcacacaacaaaatataatcaac 14487400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 105 - 346
Target Start/End: Original strand, 17842845 - 17843075
Alignment:
Q  105 tgagtgatagtctcatcaaacat--aaaataaatgataaaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagct 202  Q
    ||||||||||||||||||||||   |||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  17842845 tgagtgatagtctcatcaaacaagaaaaataaatgataaaagaccgacatcataatcagagccctaaattaagactccaaagcaaagagacgaggtagct 17842944  T
Q  203 tcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacg 302  Q
       |||| || | |||||      || |||      |||||||||||||||||||||||||||| ||||||||||| ||||||   |||||||| |||||    
T  17842945 cagaagctag-catcaag------cataag------caaaacaactaatcctgcaagccgtctacccattcatacagataggcatgcggtcaaccaaacg 17843031  T
Q  303 accactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||| ||  |||||||||| ||  ||||||||||||||||||||    
T  17843032 accattgagggttagataacatctcacaaataatatataatcaa 17843075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 145 - 335
Target Start/End: Complemental strand, 15011036 - 15010849
Alignment:
Q  145 accgacatcctaatcagagccctaaactaagactccaaaga-aaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaa 243  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||| |||||| || ||||||| |||||||| ||||| | ||||     
T  15011036 accgacatcctaatcatagccctaaactaagactccaaagacaaagggacgaggtagctccaaagctag-cctcaagcatactcac-agcaaag-caaag 15010940  T
Q  244 caactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataa 335  Q
    ||||||||||||||| ||||||| |||||||||||||||||| | |  ||||| |||| |||||||| |||||||| |||||| ||||||||    
T  15010939 caactaatcctgcaaaccgtctacccattcatacaaataggcaggcaatcaaccaaacaaccactgg-ggttagattatattctacaaataa 15010849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 15817928 - 15817830
Alignment:
Q  248 taatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||||| | |||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15817928 taatcctgcatgtcgtctacccattcattcaaataggcagacggtcaaccaaacgaccactggaggttagataatattccacaaataatatataatcaa 15817830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 8250183 - 8250324
Alignment:
Q  205 aaagcaagtcctcaagaatactcacaagcaaggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgac 304  Q
    ||||| |||||||||| |||||||||||||| | |||| ||||||||| ||||||| ||||| |||||||||||||||||| | |||||||| |||||||    
T  8250183 aaagctagtcctcaagcatactcacaagcaaagacaaagcaactaatcttgcaagctgtctacccattcatacaaataggcaggcggtcaaccaaacgac 8250282  T
Q  305 cactggaggttagataatattccacaaataatatataatcaa 346  Q
     ||| | |||   || |||||||| |||||||||||||||||    
T  8250283 gactaggggtagcattatattccaaaaataatatataatcaa 8250324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 17910188 - 17910283
Alignment:
Q  251 tcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||||| | || ||||| ||||||||||||||||||||||||||    
T  17910188 tcctgcaagccgtctactcattcatacaaataggcagacggtcaaccaaacgaccacttggggctagattatattccacaaataatatataatcaa 17910283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 26426794 - 26426888
Alignment:
Q  251 tcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||  |||| ||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  26426794 tcctgcacaccgtttatccattcatacaaataggcagacggtcaaccaaacgaccactaga-gttagataatattccacaaaaaatatataatcaa 26426888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 331
Target Start/End: Original strand, 20146809 - 20147007
Alignment:
Q  131 ataaatgataaaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcaca 230  Q
    |||||| | |||| || ||||||||||||| ||||| | ||||| |||||| |||||||| || ||  |||| |||||  |  |||| |  |||||||||    
T  20146809 ataaataacaaaacacagacatcctaatcaaagcccgacactaatactccacagaaaagaaacaagatagctccaaagataa-cctccaacatactcaca 20146907  T
Q  231 agcaaggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    ||||| | |||| |||||||| ||||| | |||||| ||||||||| |||||||| |||||||||| ||||||||||||| || ||||||| |||| |||    
T  20146908 agcaaag-caaagcaactaattctgcacgtcgtctacccattcatataaataggcagacggtcaaccaaacgaccactgggggctagataacattcaaca 20147006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 20376634 - 20376494
Alignment:
Q  56 atgtatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa-cataaaataaatgataaaataccgacatc 153  Q
    |||||||||||||| |||||||||| |||| || | ||||||||||||   ||||| || |||||||||| ||| ||||||| || | ||  ||||||      
T  20376634 atgtatcataatacatcaccaaatataaatctcaagtctcaacatact---gagtggtaatctcatcaaaacatgaaataaacgacataaacccgacact 20376538  T
Q  154 ctaatcagagccctaaactaagactccaaagaaaagagacgagg 197  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  20376537 ctaatcagagccctaaagtaagactccaaagcaaagagacgagg 20376494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 19432513 - 19432415
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccac-tggaggttagataatattccaca-aataatatataatcaa 346  Q
    ||||||||| |||||||| |||||||| ||||||||| |||||||||| ||||||| || ||||| ||||||||||||||| | ||||| ||||||||||    
T  19432513 aatcctgcatgccgtctacccattcatccaaataggcagacggtcaaccaaacgactacgtggag-ttagataatattccatataataaaatataatcaa 19432415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 17999920 - 17999850
Alignment:
Q  259 gccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccac 329  Q
    |||||||| |||||||||||||||||| | || ||||| ||||||||||||  ||||||||||||||||||    
T  17999920 gccgtctacccattcatacaaataggcaggcgatcaaccaaacgaccactgagggttagataatattccac 17999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 6461733 - 6461677
Alignment:
Q  290 ggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  6461733 ggtcaaccgaacgaccactagaggttagattatattccacaaataatatataatcaa 6461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 16206275 - 16206341
Alignment:
Q  244 caactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactgg 310  Q
    ||||||||||||||||| ||||| |||||||||||||||||| | |||||||   ||||||||||||    
T  16206275 caactaatcctgcaagctgtctacccattcatacaaataggcaggcggtcaatcgaacgaccactgg 16206341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 17151401 - 17151323
Alignment:
Q  268 ccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||| ||||||||| | ||| |||| ||||||||||| | | |||||| |||||||| |||||||||||||||||    
T  17151401 ccattcattcaaataggcagccggccaaccaaacgaccactagggtttagattatattccataaataatatataatcaa 17151323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 18366076 - 18366037
Alignment:
Q  145 accgacatcctaatcagagccctaaactaagactccaaag 184  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18366076 accgacatcctaatcagagccctaatctaagactccaaag 18366037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 6210880 - 6210835
Alignment:
Q  299 aacgaccactggaggttagataatattccacaaataatatataatca 345  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||    
T  6210880 aacgaccactgg-gtttagattatattccacaaataatatataatca 6210835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 18083459 - 18083396
Alignment:
Q  59 tatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa 124  Q
    ||||||||||| |||||||||| |||| || ||||||||||||||   |||||||| ||||||||||    
T  18083459 tatcataatacatcaccaaatataaatctcaaatctcaacatact---gagtgataatctcatcaaa 18083396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 346
Target Start/End: Original strand, 17124452 - 17124649
Alignment:
Q  148 gacatcctaatcagagcccta-aacta-agactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaaca 245  Q
    ||||||||||||||||||||| ||||| ||||||||| ||| | | |||||| |||| |||||| || ||||||| ||||||| |||||| | |||||||    
T  17124452 gacatcctaatcagagccctacaactatagactccaaggaacaaa-acgaggtagctccaaagctag-cctcaagcatactcataagcaaag-caaaaca 17124548  T
Q  246 actaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatca 345  Q
    | |||||||||| |||||||| |||||||||||||||||| ||| |||||| ||| ||| ||| | |||||||||| ||||||||| |||||||||||||    
T  17124549 attaatcctgcacgccgtctacccattcatacaaataggcagacagtcaaccaaatgacaactaggggttagataacattccacaagtaatatataatca 17124648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 149 - 346
Target Start/End: Complemental strand, 14400373 - 14400178
Alignment:
Q  149 acatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaact 248  Q
    ||||| ||||||||||||   ||||||||||||||| ||||| |||||| |||| |||||| || |||| || |||||||||||||| | ||||| ||||    
T  14400373 acatcataatcagagcccggcactaagactccaaagcaaagaaacgaggtagctccaaagctag-cctccagcatactcacaagcaaag-caaaagaact 14400276  T
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||| |||| | |||||| |||| ||||||||||||  | |  ||||| ||||||||||| |  ||||||||| |||| |||| |||  |||||||||    
T  14400275 aatcttgcacgtcgtctacccatccatacaaataggtaggctttcaaccaaacgaccactaggtgttagataacattcaacaattaaagtataatcaa 14400178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 24270290 - 24270356
Alignment:
Q  260 ccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattc 326  Q
    ||||||| |||||| ||||||||||| | |||||||| ||||||||||||| |||||||||||||||    
T  24270290 ccgtctaaccattcgtacaaataggcaggcggtcaaccaaacgaccactgggggttagataatattc 24270356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 15062017 - 15062096
Alignment:
Q  268 ccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatcaa 346  Q
    |||||||||||||| ||  | |||||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||||||    
T  15062017 ccattcatacaaatgggtaggcggtcaaccaaacaaccactgaaggttagataatattccacataataaaatataatcaa 15062096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 16216040 - 16216119
Alignment:
Q  268 ccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatcaa 346  Q
    ||||||||||||||  || | || ||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  16216040 ccattcatacaaatgagcaggcgatcaaccaaacgaccactggaggttagattatattccacataataacatataatcaa 16216119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 17984565 - 17984480
Alignment:
Q  245 aactaatcctgcaagccgtctatccattcatacaaata-ggccgacggtcaactaaacgaccactggaggttagataatattccac 329  Q
    |||||||||| ||||||||||| |||||||||| || | ||  | |||||||| ||||||||| |||||||||||||| |||||||    
T  17984565 aactaatcctacaagccgtctacccattcatacgaacaaggtaggcggtcaaccaaacgaccattggaggttagataacattccac 17984480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 23863524 - 23863601
Alignment:
Q  251 tcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattcca 328  Q
    ||||||||||||| ||  |||||||| |||||| | | | |||||| ||||||||| |||||||||||||||||||||    
T  23863524 tcctgcaagccgtatactcattcatagaaatagccaggcagtcaaccaaacgaccattggaggttagataatattcca 23863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 16227896 - 16227998
Alignment:
Q  245 aactaatcctgcaagccgtctatccattcatacaaata-ggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataat 343  Q
    |||||||| |||| |||||||| |||| ||||  |||| ||  | |||||||| ||||||||||||| |||||||||| |||||| || |||  ||||||    
T  16227896 aactaatcatgcacgccgtctacccatccatatgaataaggtaggcggtcaaccaaacgaccactggtggttagataacattccataattaaactataat 16227995  T
Q  344 caa 346  Q
    |||    
T  16227996 caa 16227998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 346
Target Start/End: Original strand, 27401846 - 27402045
Alignment:
Q  145 accgacatcctaatcagagccctaaactaagactcc-aaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaa 243  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||| |||||| |||| |||| | || ||||||||| ||| || |  |||  ||||     
T  27401846 accgacatcctaataagagccctaaactaagactcccaaagcaaaga-acgaggtagctccaaatctag-cctcaagaaaactgaccataaag--caaag 27401941  T
Q  244 caactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccact-ggaggttagataatattccacaaataatatataa 342  Q
    ||||||||||||||||| ||||| |||||||||||||||||| | |||||||| ||||||||||| || |||||||||| | ||||||||||| ||||||    
T  27401942 caactaatcctgcaagctgtctacccattcatacaaataggcaggcggtcaaccaaacgaccactggggggttagataacaatccacaaataaaatataa 27402041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 34876146 - 34876207
Alignment:
Q  148 gacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagc 209  Q
    |||||||||||||||||||||| |||||||||||||  ||| | |||||| |||| ||||||    
T  34876146 gacatcctaatcagagccctaatctaagactccaaatcaaataaacgaggtagctccaaagc 34876207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 18332311 - 18332231
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccac 329  Q
    ||||||||||| ||||||  ||||||| ||||||||  | || ||||| ||||||||||| |  |||||||||||||||||    
T  18332311 aatcctgcaagtcgtctactcattcatgcaaataggtaggcgatcaaccaaacgaccactaggtgttagataatattccac 18332231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 20718850 - 20718906
Alignment:
Q  44 tagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacata 100  Q
    ||||||| ||| |||||||||||  |  ||||||||||||| |||||||||||||||    
T  20718850 tagccatgtcacatgtatcataacgcaacaccaaataaaatctccaatctcaacata 20718906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 346
Target Start/End: Original strand, 1797 - 1991
Alignment:
Q  148 gacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcacaagcaaggtcaaaacaac 247  Q
    ||||||||||| ||||||| | ||||||||||||||| ||| | |||||  |||| |||||| || ||||||| ||||||||||||||  ||||| ||||    
T  1797 gacatcctaattagagcccgacactaagactccaaagcaaaaa-acgagttagctccaaagctag-cctcaagcatactcacaagcaa--tcaaagcaac 1892  T
Q  248 taatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||||||| |||||| |||||||||| ||| ||| |||||||||| |||||||||| |   ||||||||| ||||||||| |||  |||||||||    
T  1893 taatcctgcaagtcgtctacccattcatacgaattggcagacggtcaaccaaacgaccaccgagagttagataacattccacaattaaattataatcaa 1991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 6808644 - 6808758
Alignment:
Q  291 gtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaacttgaaagcaaaaccgtatattcgtattcaatgatcaactaaac 390  Q
    |||||| ||||||||||| | ||||||| ||||||||||||||||||||| |||||||||||| |||| | || ||||| |||||||||||||| |||||    
T  6808644 gtcaaccaaacgaccactaggggttagacaatattccacaaataatatattatcaacttgaaaacaaagcagtgtattcatattcaatgatcaattaaac 6808743  T
Q  391 acttaattaaatcat 405  Q
    |||||||||||||||    
T  6808744 acttaattaaatcat 6808758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 131 - 308
Target Start/End: Complemental strand, 25487856 - 25487683
Alignment:
Q  131 ataaatgataaaataccgacatcctaatcagagccctaaactaagactccaaagaaaagagacgaggcagcttcaaagcaagtcctcaagaatactcaca 230  Q
    ||||| ||||||| || ||||||||||||||||||||||| |||||||| |||| ||||||||||||  ||||| |||| || ||||||| |||||||||    
T  25487856 ataaacgataaaaaactgacatcctaatcagagccctaaattaagactctaaagcaaagagacgaggttgcttc-aagctag-cctcaagcatactcaca 25487759  T
Q  231 agcaaggtcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccact 308  Q
    ||||||  |||||||||||||| |||||| ||||||  |||||| ||||||| |  |||||||||| |||||| ||||    
T  25487758 agcaag--caaaacaactaatcatgcaagtcgtctactcattcaaacaaatacgtagacggtcaaccaaacgatcact 25487683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 19978742 - 19978673
Alignment:
Q  261 cgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||    
T  19978742 cgtctaccaattcatacaaataggcagacggtcaaccaaacgaccactggaggttatattatattccaca 19978673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 346
Target Start/End: Complemental strand, 30084220 - 30084128
Alignment:
Q  254 tgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatcaa 346  Q
    |||| |||||||| ||||||||| |||||||| | | |||||| |||||||||||  |||||||||||||||||||| |||||  |||||||||    
T  30084220 tgcacgccgtctacccattcataaaaataggcaggcagtcaacgaaacgaccact-aaggttagataatattccacataataaagtataatcaa 30084128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 17385073 - 17385129
Alignment:
Q  290 ggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    |||||||  |||||||||| | ||||| || ||||||||||||||||||||||||||    
T  17385073 ggtcaaccgaacgaccactaggggttaaattatattccacaaataatatataatcaa 17385129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 17760732 - 17760693
Alignment:
Q  245 aactaatcctgcaagccgtctatccattcatacaaatagg 284  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  17760732 aactaatcctgcacgccgtctacccattcatacaaatagg 17760693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 19062052 - 19062013
Alignment:
Q  245 aactaatcctgcaagccgtctatccattcatacaaatagg 284  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  19062052 aactaatcctgcacgccgtctacccattcatacaaatagg 19062013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 6817563 - 6817527
Alignment:
Q  244 caactaatcctgcaagccgtctatccattcatacaaa 280  Q
    |||||||||||||| |||||||| |||||||||||||    
T  6817563 caactaatcctgcacgccgtctacccattcatacaaa 6817527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 7254471 - 7254519
Alignment:
Q  269 cattcatacaaataggccgacggtcaactaaacgaccactggaggttag 317  Q
    ||||||||||||||||  | |||||||| ||||||||||||| ||||||    
T  7254471 cattcatacaaataggtaggcggtcaaccaaacgaccactgggggttag 7254519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 3007 - 2915
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatata 341  Q
    ||||||||| |||||||| |||||||||||||||||  | |||||||| ||| ||||||||| | |||||| |||||||||||||||||||||    
T  3007 aatcctgcatgccgtctacccattcatacaaataggtaggcggtcaaccaaatgaccactggggattagattatattccacaaataatatata 2915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 14053 - 13972
Alignment:
Q  249 aatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||||||||||||||| ||||||| |||||||||| | | |||||| ||| ||||||| | |||||||||||||||||||    
T  14053 aatcctgcaagccgtctacccattcaaacaaataggcaggcagtcaaccaaatgaccactaggggttagataatattccaca 13972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 201830 - 201906
Alignment:
Q  269 cattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    ||||||||||||||||| |  ||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  201830 cattcatacaaataggcaggtggtcaaccaaacgaccactgg-ggttagatagtattccataaataatatataatcaa 201906  T

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Target: scaffold1869 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 515 - 601
Alignment:
Q  260 ccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaaataatatataatcaa 346  Q
    ||||||| |||||||||||||||||| ||  |||||| ||| ||||||||  ||||| |||| ||||||||||||| ||||||||||    
T  515 ccgtctacccattcatacaaataggcagatagtcaaccaaatgaccactgagggttatataacattccacaaataaaatataatcaa 601  T

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Target: scaffold0338 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 18650 - 18572
Alignment:
Q  268 ccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatca 345  Q
    |||||||||||||| ||  |||||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||||    
T  18650 ccattcatacaaatgggtagacggtcaaccaaacgaccactgagggttagataatattccacataataaaatataatca 18572  T

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Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 11421 - 11339
Alignment:
Q  248 taatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||||||||||||| || ||||||||| |||||||| |  ||||||| |||||| |||||| ||||| ||| |||||||||    
T  11421 taatcctgcaagccgtatacccattcatataaataggcaggtggtcaaccaaacgatcactgggggttaaatagtattccaca 11339  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 33054 - 33136
Alignment:
Q  239 caaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataa 321  Q
    |||| |||| |||||| || |||||||| |||||||||||||||||| | |||||||| |||||| ||||   ||||||||||    
T  33054 caaagcaacaaatcctacacgccgtctacccattcatacaaataggcaggcggtcaacgaaacgaacactcagggttagataa 33136  T

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Target: scaffold1924 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 1101 - 1028
Alignment:
Q  257 aagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||||||| | ||||||||||||||||  ||  ||||| |||| ||||||||  ||||||||||||||||||    
T  1101 aagccgtctaccaattcatacaaataggcaaacaatcaaccaaacaaccactgggcgttagataatattccaca 1028  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 11843518 - 11843587
Alignment:
Q  261 cgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccaca 330  Q
    |||||| ||||| |||||||||||| |  ||||||| ||||||||||| | |||||||| ||||||||||    
T  11843518 cgtctacccattaatacaaataggcagggggtcaaccaaacgaccactaggggttagattatattccaca 11843587  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 64421 - 64358
Alignment:
Q  246 actaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactg 309  Q
    |||| ||||||| || ||||| |||||||||||||||||  | |||||||| ||||||||||||    
T  64421 actattcctgcacgctgtctacccattcatacaaataggtaggcggtcaaccaaacgaccactg 64358  T

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Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 71370 - 71312
Alignment:
Q  289 cggtcaactaaacgaccactggaggttagataatattccaca-aataatatataatcaa 346  Q
    |||||||| ||||||||| ||  ||||||||||||||||||| ||||| ||||||||||    
T  71370 cggtcaaccaaacgaccagtgagggttagataatattccacataataagatataatcaa 71312  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 10744 - 10801
Alignment:
Q  153 cctaatcagagccctaaactaagactcc-aaagaaaagagacgaggcagcttcaaagc 209  Q
    |||||||||| ||||||||||||||||| |||  |||||||||||| |||| ||||||    
T  10744 cctaatcagaaccctaaactaagactcctaaaacaaagagacgaggtagctccaaagc 10801  T

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Target: scaffold0186; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 10807 - 10899
Alignment:
Q  238 tcaaaacaactaatcctgcaagccgtctatccattcatacaaataggccgacggtcaactaaacgaccactggaggttagataatattccacaa 331  Q
    ||||| ||||||||| |||||| ||||||  |||||||||||||  || | | |||||| ||| ||||||||| |||||||||| |||| ||||    
T  10807 tcaaagcaactaatcatgcaagtcgtctacacattcatacaaatcagcgggcagtcaaccaaatgaccactgg-ggttagataacattcaacaa 10899  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 80389 - 80438
Alignment:
Q  153 cctaatcagagccctaaactaagactccaaagaaaagagacgaggcagct 202  Q
    |||||||||||||||||||||||||||| ||| ||| || ||||| ||||    
T  80389 cctaatcagagccctaaactaagactcccaaggaaaaagtcgaggtagct 80438  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 22687 - 22743
Alignment:
Q  44 tagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacata 100  Q
    ||||||| ||| |||||||||||  |  ||||||||||||| |||||||||||||||    
T  22687 tagccatgtcacatgtatcataacgcaacaccaaataaaatctccaatctcaacata 22743  T

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