View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1094_high_5 (Length: 289)
Name: NF1094_high_5
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1094_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 20338584 - 20338322
Alignment:
| Q |
1 |
ccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338584 |
ccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttcct |
20338485 |
T |
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| Q |
101 |
tatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgaca |
200 |
Q |
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| T |
20338484 |
tgtggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgaca |
20338385 |
T |
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| Q |
201 |
tagaggctgtcctctgtaagtttatggtaaggatcttctggaagatcgataatgattggagga |
263 |
Q |
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| T |
20338384 |
tagaggctgtcctctgtaagtttgtggtaaggatcttctggaagatcgataatgattggagga |
20338322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 76 - 262
Target Start/End: Original strand, 20141303 - 20141492
Alignment:
| Q |
76 |
accctaattttgcagatattttccttatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagag |
175 |
Q |
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|||||||||||| ||| |||||||| |||| |||||||||||||||||| | |||||||||||| ||| || |||||||||||||| |||| || || |
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| T |
20141303 |
accctaattttggagacattttcctcgtggctgggttccaaaaacgaagcaacgtcacactattaaaatcagaggtgaaaaactgactgaacaaacaaag |
20141402 |
T |
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| Q |
176 |
taatccattgtaggaaccaacgacatagaggctgtcc---tctgtaagtttatggtaaggatcttctggaagatcgataatgattggagg |
262 |
Q |
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| T |
20141403 |
taatccattgcaggaaccaacaacaaagagacagcccttgtctgcaagttgatggttaggatcttctggtagattgataatgattggagg |
20141492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 20126586 - 20126760
Alignment:
| Q |
39 |
aaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttccttatggcagggttccaaaaacgaagccatgtcacactat |
138 |
Q |
| |
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|||||||||||||||||||| | || || | |||| ||||||||||| |||||||| || | |||| || ||||||||||||||||| || ||||||| |
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| T |
20126586 |
aaattaggatagaaatatagctcattatggagagagtaccctaatttttcagatattgcccatgtggctggattccaaaaacgaagccacgtaacactat |
20126685 |
T |
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| Q |
139 |
tataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgacatagaggctgtcct |
213 |
Q |
| |
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|| |||| | |||||||| || |||| |||||||||||||||||||| |||||||||| ||| | |||| ||||| |
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| T |
20126686 |
taaaattggaggtgaaaacctaaccaaacaagcagagtaatccattgcaggaaccaacaacaaacaggcagtcct |
20126760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20133727 - 20133975
Alignment:
| Q |
1 |
ccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttcct |
100 |
Q |
| |
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|||| ||||||| || ||| ||| ||||||||| | | |||||||||||||| ||||| | || |||| ||| |||||||||||| ||||||||||| |
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| T |
20133727 |
ccttgtaagtgtcggttgaattaacatagccaaacttcaaattaggatagaaccataggtctttatgaagagaataccctaattttggtgatattttcct |
20133826 |
T |
|
| Q |
101 |
tatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgaca |
200 |
Q |
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|||| |||||||| || ||||| |||| ||||||||| |||| | | ||||||| |||| |||||||||||||||||||| | |||||||| ||| |
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| T |
20133827 |
cgtggctgggttccagaagcgaagaaatgttacactattaaaattggagttgaaaaattgacagaacaagcagagtaatccattgcatgaaccaacaaca |
20133926 |
T |
|
| Q |
201 |
tagaggctgtcc---tctgtaagtttatggtaaggatcttctggaagat |
246 |
Q |
| |
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|| | | |||| | ||||||| ||||| ||||||||||||||||| |
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| T |
20133927 |
taatgacagtccttgttcgtaagttgatggttaggatcttctggaagat |
20133975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 20374913 - 20375177
Alignment:
| Q |
1 |
ccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttcct |
100 |
Q |
| |
|
|||||||||||| || ||| ||| |||| | || ||| |||||| ||| ||||| |||| ||| ||||||| | ||||||||| |||||||| |||| |
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| T |
20374913 |
ccttataagtgtcggttgagttaacataacaaaacgtcaaattatgatggaaatgtaggttgttatgaatagtatatcctaatttttcagatattgtcct |
20375012 |
T |
|
| Q |
101 |
tatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgaca |
200 |
Q |
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|||| ||||||||||| || | ||| ||| || | | |||||| ||||||| | || ||| |||||||||||||||||||| | || ||||| | |
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| T |
20375013 |
cgtggctgggttccaaaagcgtatccacgtctcaatgtcgaaattagcggtgaaagaatggccaaacaagcagagtaatccattgcaagagccaactatg |
20375112 |
T |
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| Q |
201 |
tagaggctgtcctctgt----aagtttatggtaaggatcttctggaagatcgataatgattggagg |
262 |
Q |
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| ||||| || | ||| ||||| || |||||||||||||||||||| || |||||||||||| |
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| T |
20375113 |
tcgaggccgtgtt-tgtcatcaagttgatagtaaggatcttctggaagattgaaaatgattggagg |
20375177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 6865299 - 6865336
Alignment:
| Q |
90 |
gatattttccttatggcagggttccaaaaacgaagcca |
127 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
6865299 |
gataatttccttatggctgggttccaaaaacgaagcca |
6865336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 22080438 - 22080390
Alignment:
| Q |
79 |
ctaattttgcagatattttccttatggcagggttccaaaaacgaagcca |
127 |
Q |
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|||||||| | |||||| ||||| |||| |||||||||||||||||||| |
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| T |
22080438 |
ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagcca |
22080390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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