View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1094_high_7 (Length: 278)
Name: NF1094_high_7
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1094_high_7 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 43 - 268
Target Start/End: Original strand, 27434244 - 27434469
Alignment:
| Q |
43 |
gatagtgcactcttttatgcaagctgcaggattgaccattgatcatcttgtagattgttatagacatagtgaatgtgtaagcctagcagaaagaccttgg |
142 |
Q |
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| T |
27434244 |
gatagtgcactcttttatgcaagctgcaggattgaccattgatcatcttgtagattgttatcgacatagtgaatgtgtaagcctagcagaaagaccttgg |
27434343 |
T |
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| Q |
143 |
aggcatatctaataaacacattcattcactaccacaattttcaatttggttttgctagttcaatttgtataattcaagcaagtaataatgttgtaatttg |
242 |
Q |
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| T |
27434344 |
aggcatatctaataaacacattcattcactaccacaattttcaatttggttttgttagttcaatttgtataattcaagcaagtaataatgttgtaatttg |
27434443 |
T |
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| Q |
243 |
tataattccaatttccatcccttgta |
268 |
Q |
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| T |
27434444 |
tataattccaatttccatgccttgta |
27434469 |
T |
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Target: scaffold0009 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 102159 - 102067
Alignment:
| Q |
51 |
actcttttatgcaagctgcaggattgaccattgatcatcttgtagattgttatagacatagtgaatgtgtaagcctagcagaaagaccttgga |
143 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| | ||||||||| || | |||||||||| |||||||||||||||||||| |
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| T |
102159 |
actcttttatgcaagttgcaggattgactattgatcatcttgttggttgttataggcacaaagaatgtgtaaacctagcagaaagaccttgga |
102067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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