View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1094_high_9 (Length: 251)

Name: NF1094_high_9

Description: NF1094

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1094_high_9

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 135; E-Value: 2e-70

Query Start/End: Original strand, 6 - 244

Target Start/End: Complemental strand, 39003448 - 39003214

Alignment:

Q	6	ggaaaattaagatcataattggttttcttgagaaaattataatatttattttttgaa-attagannnnnnnnnnnnnagaaaattaagattttatataca	104	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39003448	ggaaaattgagatcataattggttttcttgagaaaattataatatttattttttgaagattagatttttttt-----agaaaattaagattttatataca	39003354	T

Q	105	catatataagtggnnnnnnnaatctatatacaataatacaaacatctcaaatagaagaagttctaaagtggaggaagtatatgggactcaaattccctgt	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	39003353	catatataagtggtttttttaatctatatacaataatacaaacatctcaaatagaagaagttctaaagtggaggaagtatatgggactcagattccctgt	39003254	T

Q	205	tgtaaaaaagcacgctgttttgccggtgtttttcatctca	244	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	39003253	tgtaaaaaagtattctgttttaccgctatttttcatctca	39003214	T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 186 - 244

Target Start/End: Original strand, 54425633 - 54425691

Alignment:

Q	186	tgggactcaaattccctgttgtaaaaaagcacgctgttttgccggtgtttttcatctca	244	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	54425633	tgggactgagattccctgttgtaaaaaagcacgatgttttaccgtagttttgcatctca	54425691	T

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