View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1094_low_1 (Length: 657)

Name: NF1094_low_1
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1094_low_1
NF1094_low_1
[»] chr4 (10 HSPs)
chr4 (104-651)||(42769527-42770052)
chr4 (244-472)||(42743797-42744031)
chr4 (244-472)||(42753156-42753390)
chr4 (244-468)||(42762778-42763002)
chr4 (244-395)||(42717169-42717320)
chr4 (244-472)||(42734482-42734716)
chr4 (142-223)||(42762694-42762775)
chr4 (437-474)||(42717371-42717408)
chr4 (136-216)||(42734726-42734806)
chr4 (136-204)||(42717079-42717147)
[»] chr5 (2 HSPs)
chr5 (251-410)||(23040511-23040670)
chr5 (427-472)||(23040443-23040488)


Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 104 - 651
Target Start/End: Original strand, 42769527 - 42770052
Alignment:
Q  104 atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769527 atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa 42769626  T
Q  204 tgtccgcttcatagcatccaccgcctacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag 303  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769627 tgtctgcttcatagcatccaccgcccacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag 42769726  T
Q  304 gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769727 gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt 42769826  T
Q  404 acatttgtggatttaccagcatctgccaaatagcctttgtaaaaatatcttgctccaattagcttcctatatatcatgaacaaataatataataatggag 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42769827 acatttgtggatttaccagcatctgccaaatagcctttgtaaaaatatcttgctccaattagcttcctatatatcatgaacaaataatataaaaatggag 42769926  T
Q  504 ttagagtgaaaaattaggtattatgtgtaaactatatatgtatcagaagcataacattgtgttacttttaacaaaaagatgctcattagataaatacgag 603  Q
    |||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||    
T  42769927 ttagagtgaaaaattaggtattatgtgtaaactatatatgt----------------------acttttaacaaaaagatgctcattagataaatacgag 42770004  T
Q  604 tatataacaagattaacctgttgcatttaaatttatcagtattatcta 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770005 tatataacaagattaacctgttgcatttaaatttatcagtattatcta 42770052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 244 - 472
Target Start/End: Original strand, 42743797 - 42744031
Alignment:
Q  244 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 343  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42743797 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42743896  T
Q  344 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc 437  Q
    || || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||| |  | ||  || |       |||||| |||||    
T  42743897 ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc 42743996  T
Q  438 ctttgtaaaaatatcttgctccaattagcttccta 472  Q
    |||||| |||||||||||||||||| |||||||||    
T  42743997 ctttgttaaaatatcttgctccaataagcttccta 42744031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 244 - 472
Target Start/End: Original strand, 42753156 - 42753390
Alignment:
Q  244 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 343  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42753156 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42753255  T
Q  344 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc 437  Q
    || || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||| |  | ||  || |       |||||| |||||    
T  42753256 ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc 42753355  T
Q  438 ctttgtaaaaatatcttgctccaattagcttccta 472  Q
    |||||| |||||||||||||||||| |||||||||    
T  42753356 ctttgttaaaatatcttgctccaataagcttccta 42753390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 244 - 468
Target Start/End: Original strand, 42762778 - 42763002
Alignment:
Q  244 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 343  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42762778 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct 42762877  T
Q  344 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagcatctgccaaatagcctttgt 443  Q
    || || ||||||||||| |||||||||||||| |||   || ||||||||||| |  | ||||||| ||| | ||  || || ||||| | |||||||      
T  42762878 ccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtgcactatgaagcgatacatttttggctctataaggatttgccagaaagcctttaa 42762977  T
Q  444 aaaaatatcttgctccaattagctt 468  Q
    ||||||||||||||||||| |||||    
T  42762978 aaaaatatcttgctccaataagctt 42763002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 42717169 - 42717320
Alignment:
Q  244 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 343  Q
    |||||| |||||||||||  |||||||||| || || ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||||||    
T  42717169 ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcct 42717268  T
Q  344 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactat 395  Q
    || || |||||||||||||||| |||||||||||||| ||| ||||||||||    
T  42717269 ccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactat 42717320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 244 - 472
Target Start/End: Complemental strand, 42734716 - 42734482
Alignment:
Q  244 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 343  Q
    |||||| ||||||||||| | ||||||||| || || ||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||||||    
T  42734716 ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct 42734617  T
Q  344 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc 437  Q
    || || ||||||||||||||||||||||||||  ||  ||| || ||||||| ||||||| |||||| |  | ||  || |       |||||| |||||    
T  42734616 ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccatatagc 42734517  T
Q  438 ctttgtaaaaatatcttgctccaattagcttccta 472  Q
    ||||||||||||||||||| ||||| |||||||||    
T  42734516 ctttgtaaaaatatcttgcgccaataagcttccta 42734482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 42762694 - 42762775
Alignment:
Q  142 acccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca 223  Q
    ||||| |||| |||||| |||||||||||| |||  |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  42762694 acccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca 42762775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 42717371 - 42717408
Alignment:
Q  437 cctttgtaaaaatatcttgctccaattagcttcctata 474  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42717371 cctttgtaaaaatatcttgctccaataagcttcctata 42717408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 42734806 - 42734726
Alignment:
Q  136 atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcata 216  Q
    |||||||| || |||| | |||| |||||||||||| |||  |||||||||||| |||||||||||||| || || |||||    
T  42734806 atcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata 42734726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 42717079 - 42717147
Alignment:
Q  136 atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaat 204  Q
    ||||||||||| |||| | |||| ||| || ||||| |||  |||||||||||| ||||||||||||||    
T  42717079 atcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaat 42717147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 251 - 410
Target Start/End: Complemental strand, 23040670 - 23040511
Alignment:
Q  251 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg 350  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||  | |    
T  23040670 accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacag 23040571  T
Q  351 ttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  23040570 ttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttcatttg 23040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 23040488 - 23040443
Alignment:
Q  427 tgccaaatagcctttgtaaaaatatcttgctccaattagcttccta 472  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||    
T  23040488 tgccagatagcctttgttaaaatatcttgctccaataagcttccta 23040443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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