View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1094_low_9 (Length: 283)

Name: NF1094_low_9
Description: NF1094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1094_low_9
NF1094_low_9
[»] chr5 (7 HSPs)
chr5 (165-283)||(41100569-41100684)
chr5 (10-41)||(11313965-11313996)
chr5 (10-41)||(16528763-16528794)
chr5 (10-41)||(16528945-16528976)
chr5 (10-41)||(16529121-16529152)
chr5 (10-41)||(41093158-41093189)
chr5 (10-38)||(41092978-41093006)
[»] scaffold1155 (1 HSPs)
scaffold1155 (8-41)||(1035-1068)
[»] scaffold0345 (1 HSPs)
scaffold0345 (8-41)||(9149-9182)
[»] scaffold0105 (1 HSPs)
scaffold0105 (8-41)||(29798-29831)
[»] chr3 (3 HSPs)
chr3 (9-41)||(11454367-11454399)
chr3 (10-41)||(46451238-46451269)
chr3 (13-41)||(11454548-11454576)
[»] chr8 (9 HSPs)
chr8 (10-41)||(604417-604448)
chr8 (10-41)||(604764-604795)
chr8 (10-41)||(37197817-37197848)
chr8 (10-41)||(37198001-37198032)
chr8 (10-41)||(44430053-44430084)
chr8 (10-41)||(44430404-44430435)
chr8 (10-41)||(44433788-44433819)
chr8 (10-41)||(44434139-44434170)
chr8 (13-41)||(44429383-44429411)
[»] chr7 (1 HSPs)
chr7 (10-41)||(48641104-48641135)
[»] chr6 (2 HSPs)
chr6 (10-41)||(25068126-25068157)
chr6 (10-38)||(23622207-23622235)
[»] chr4 (1 HSPs)
chr4 (10-41)||(21585467-21585498)
[»] chr2 (6 HSPs)
chr2 (10-41)||(5001282-5001313)
chr2 (10-41)||(5012952-5012983)
chr2 (10-41)||(44543592-44543623)
chr2 (13-41)||(5001436-5001464)
chr2 (10-38)||(5001610-5001638)
chr2 (13-41)||(5013106-5013134)
[»] chr1 (5 HSPs)
chr1 (10-41)||(5428919-5428950)
chr1 (10-41)||(28950076-28950107)
chr1 (10-41)||(51113892-51113923)
chr1 (10-38)||(24595224-24595252)
chr1 (10-38)||(27296326-27296354)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 41100569 - 41100684
Alignment:
Q  165 taaaaaatattatttatagagataaaacatatttttacttcttgatttatttaattttattgttaggaaactactctactgactggcagtacagtagtac 264  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41100569 taaaaaatattatttatagagataaaacatattttaactt---gatttatttaattttattgttagcaaactactctactgactggcagtacagtagtac 41100665  T
Q  265 tgcataattatctcccgcg 283  Q
    |||||||||||||||||||    
T  41100666 tgcataattatctcccgcg 41100684  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 11313996 - 11313965
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  11313996 aacaaaattaataaataaggataagtgtagaa 11313965  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 16528794 - 16528763
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  16528794 aacaaaattaataaataaggataagtgtagaa 16528763  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 16528976 - 16528945
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  16528976 aacaaaattaataaataaggataagtgtagaa 16528945  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 16529152 - 16529121
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  16529152 aacaaaattaataaataaggataagtgtagaa 16529121  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 41093158 - 41093189
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  41093158 aacaaaattaataaataaggataagtgtagaa 41093189  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 41092978 - 41093006
Alignment:
Q  10 aacaaaattaataaataaggataagtgta 38  Q
    |||||||||||||||||||||||||||||    
T  41092978 aacaaaattaataaataaggataagtgta 41093006  T

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Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 1035 - 1068
Alignment:
Q  8 ccaacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||||    
T  1035 ccaacaaaattaataaataaggataagtgtagaa 1068  T

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Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 9182 - 9149
Alignment:
Q  8 ccaacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||||    
T  9182 ccaacaaaattaataaataaggataagtgtagaa 9149  T

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Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 29798 - 29831
Alignment:
Q  8 ccaacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||||    
T  29798 ccaacaaaattaataaataaggataagtgtagaa 29831  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 11454399 - 11454367
Alignment:
Q  9 caacaaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||||||    
T  11454399 caacaaaattaataaataaggataagtgtagaa 11454367  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 46451269 - 46451238
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  46451269 aacaaaattaataaataaggataagtgtagaa 46451238  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 11454576 - 11454548
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  11454576 aaaattaataaataaggataagtgtagaa 11454548  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 604417 - 604448
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  604417 aacaaaattaataaataaggataagtgtagaa 604448  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 604764 - 604795
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  604764 aacaaaattaataaataaggataagtgtagaa 604795  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 37197817 - 37197848
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  37197817 aacaaaattaataaataaggataagtgtagaa 37197848  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 37198001 - 37198032
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  37198001 aacaaaattaataaataaggataagtgtagaa 37198032  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 44430084 - 44430053
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  44430084 aacaaaattaataaataaggataagtgtagaa 44430053  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 44430435 - 44430404
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  44430435 aacaaaattaataaataaggataagtgtagaa 44430404  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 44433819 - 44433788
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  44433819 aacaaaattaataaataaggataagtgtagaa 44433788  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 44434170 - 44434139
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  44434170 aacaaaattaataaataaggataagtgtagaa 44434139  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44429411 - 44429383
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44429411 aaaattaataaataaggataagtgtagaa 44429383  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 48641104 - 48641135
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  48641104 aacaaaattaataaataaggataagtgtagaa 48641135  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 25068157 - 25068126
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  25068157 aacaaaattaataaataaggataagtgtagaa 25068126  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 23622235 - 23622207
Alignment:
Q  10 aacaaaattaataaataaggataagtgta 38  Q
    |||||||||||||||||||||||||||||    
T  23622235 aacaaaattaataaataaggataagtgta 23622207  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 21585467 - 21585498
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  21585467 aacaaaattaataaataaggataagtgtagaa 21585498  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 5001282 - 5001313
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  5001282 aacaaaattaataaataaggataagtgtagaa 5001313  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 5012952 - 5012983
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  5012952 aacaaaattaataaataaggataagtgtagaa 5012983  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 44543592 - 44543623
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  44543592 aacaaaattaataaataaggataagtgtagaa 44543623  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5001436 - 5001464
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5001436 aaaattaataaataaggataagtgtagaa 5001464  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 5001610 - 5001638
Alignment:
Q  10 aacaaaattaataaataaggataagtgta 38  Q
    |||||||||||||||||||||||||||||    
T  5001610 aacaaaattaataaataaggataagtgta 5001638  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5013106 - 5013134
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5013106 aaaattaataaataaggataagtgtagaa 5013134  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 5428950 - 5428919
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  5428950 aacaaaattaataaataaggataagtgtagaa 5428919  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 28950076 - 28950107
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  28950076 aacaaaattaataaataaggataagtgtagaa 28950107  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 51113923 - 51113892
Alignment:
Q  10 aacaaaattaataaataaggataagtgtagaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  51113923 aacaaaattaataaataaggataagtgtagaa 51113892  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 24595252 - 24595224
Alignment:
Q  10 aacaaaattaataaataaggataagtgta 38  Q
    |||||||||||||||||||||||||||||    
T  24595252 aacaaaattaataaataaggataagtgta 24595224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 27296354 - 27296326
Alignment:
Q  10 aacaaaattaataaataaggataagtgta 38  Q
    |||||||||||||||||||||||||||||    
T  27296354 aacaaaattaataaataaggataagtgta 27296326  T

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