View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10950_high_1 (Length: 762)
Name: NF10950_high_1
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 14 - 745
Target Start/End: Original strand, 18461172 - 18461898
Alignment:
| Q |
14 |
cagagaggcaataagttaactaattaacttggtgtaacggaaataacaatatgaaaagcaagcaaagagaaagagtg-aagtcattttaactaataacct |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18461172 |
cagagaggcaataagttaactacttaacttggtgtaacggaaataacaatatgaaaagcaagcaaagagaaagagtgcaagtcattttaactaataacct |
18461271 |
T |
|
| Q |
113 |
gtattctggtgccgaagcttgatttgatctatgagttcttccaaactgctgaattgcacggtcagcactccatggaagctcgagcgttaaatgaactctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18461272 |
gtattctggtgccgaagcttgatttgatctatgagttcttccaaactgctgaattgcacggtcagcactccatggaagctctagcgttaaatgaactctt |
18461371 |
T |
|
| Q |
213 |
cttttctgttgtgtaaaggtcacgcacggggcacataatggggaaaacaagaataaaacagattataagttacatcaagcaggagttcaaaaccacacca |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461372 |
cttttctgttgtgtaaaggtcaca----gggcacataatggggaaaacaagaataaaacagattataagttacatcaagcaggagttcaaaaccacacca |
18461467 |
T |
|
| Q |
313 |
aatcataaacaagggacagacaaaagacaatgatatcagggataaaaatactttcaagtcagattggcatacctgatttgctgctctcctatctgcctgc |
412 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461468 |
aatcataaacaagggacagacaa--gacaatgatatcagggataaaaatactttcaagtcagattggcatacctgatttgctgctctcctatctgcctgc |
18461565 |
T |
|
| Q |
413 |
aaagaaacaccagctgatccagcttcagagataatagcaacaaactttttaccgtccataaaaagctgcttttcatgcatgttaaccatttccatggtga |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461566 |
aaagaaacaccagctgatccagcttcagagataatagcaacaaactttttaccatccataaaaagctgcttttcatgcatgttaaccatttccatggtga |
18461665 |
T |
|
| Q |
513 |
cttcctttctaaacagatacacaaaaattaacataatgcagctactattaaatgctgttaatcaataagatttggagacgctacaacttacgtattacga |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461666 |
cttcctttctaaacagatacacaaaaattaacataatgcagatactattaaatgctgttaatcaataagatttggagacgctacaacttacgtattacga |
18461765 |
T |
|
| Q |
613 |
gcctgataagttacaccctttccagcagggcccctcacaagcatgcctctccttcctgtaatttctgcaactttatctggcccccctagctgtatataaa |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461766 |
gcctgataagttacaccctttccagcagggcccctcacaagcatgcctctccttcctgtaatttctgcaactttatctggcccccctagctgtatataaa |
18461865 |
T |
|
| Q |
713 |
tataaataaatttataaccagaaatgttgcatc |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18461866 |
tataaataaatttataaccagaaatgttgcatc |
18461898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 34666078 - 34666203
Alignment:
| Q |
109 |
acctgtattctggtgccgaagcttgatttgatctatgagttcttccaaactgctgaattgcacggtcagcactccatggaagctcgagcgttaaatgaac |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || || || ||||| |
|
|
| T |
34666078 |
acctgtattctggtgctgagacttgatttgatctatgagttcttccaaactgttgaattgctcggtcggcactccatggaagttcaagagtcaagtgaac |
34666177 |
T |
|
| Q |
209 |
tcttcttttctgttgtgtaaaggtca |
234 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
34666178 |
ccttcttttctattttgtaaaggtca |
34666203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 501
Target Start/End: Original strand, 34666362 - 34666456
Alignment:
| Q |
407 |
gcctgcaaagaaacaccagctgatccagcttcagagataatagcaacaaactttttaccgtccataaaaagctgcttttcatgcatgttaaccat |
501 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||||| ||||| || ||||| |||| |||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
34666362 |
gcctgtaacgaaacgccagctgatcctgcttcagagatgatagccactaacttcgtaccttccataaagagctttttttcattcatgttgaccat |
34666456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 686
Target Start/End: Original strand, 34666557 - 34666647
Alignment:
| Q |
596 |
caacttacgtattacgagcctgataagttacaccctttccagcagggcccctcacaagcatgcctctccttcctgtaatttctgcaacttt |
686 |
Q |
| |
|
||||||||| || |||| ||||||| |||||| ||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
34666557 |
caacttacgaatatcgagtctgataaaacacacccgttccactaggggccctcacaagcattcctttccttccagtaatttctgcaacttt |
34666647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 26847493 - 26847618
Alignment:
| Q |
109 |
acctgtattctggtgccgaagcttgatttgatctatgagttcttccaaactgctgaattgcacggtcagcactccatggaagctcgagcgttaaatgaac |
208 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || || || ||||| |
|
|
| T |
26847493 |
acctgtattctggtgctgagacttgattggatctatgagttcttccaaactgctgaattgctcggtcggcactccatggaagttcaagagtcaagtgaac |
26847592 |
T |
|
| Q |
209 |
tcttcttttctgttgtgtaaaggtca |
234 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
26847593 |
ccttcttttctattttgtaaaggtca |
26847618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 26959848 - 26959973
Alignment:
| Q |
109 |
acctgtattctggtgccgaagcttgatttgatctatgagttcttccaaactgctgaattgcacggtcagcactccatggaagctcgagcgttaaatgaac |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || || || ||||| |
|
|
| T |
26959848 |
acctgtattctggtgctgagacttgatttgatctatgagttcttccaaactgttgaattgctcggtcggcactccatggaagttcaagagtcaagtgaac |
26959947 |
T |
|
| Q |
209 |
tcttcttttctgttgtgtaaaggtca |
234 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
26959948 |
ccttcttttctattttgtaaaggtca |
26959973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 404 - 501
Target Start/End: Original strand, 26847789 - 26847886
Alignment:
| Q |
404 |
tctgcctgcaaagaaacaccagctgatccagcttcagagataatagcaacaaactttttaccgtccataaaaagctgcttttcatgcatgttaaccat |
501 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| |||| || |||| |||||| ||||| |
|
|
| T |
26847789 |
tctgcctgcaacgaaacaccagctgatccagcttcagagatgatggccactaacttcttaccttccataaagagctttttctcattcatgttgaccat |
26847886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 686
Target Start/End: Original strand, 26847978 - 26848067
Alignment:
| Q |
597 |
aacttacgtattacgagcctgataagttacaccctttccagcagggcccctcacaagcatgcctctccttcctgtaatttctgcaacttt |
686 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
26847978 |
aactcacgtatttcgagtctgataaaacacacccgttccacttggggccctcacaagcattcctttccttcctgtaatttctgcaacttt |
26848067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 501
Target Start/End: Original strand, 26960162 - 26960256
Alignment:
| Q |
407 |
gcctgcaaagaaacaccagctgatccagcttcagagataatagcaacaaactttttaccgtccataaaaagctgcttttcatgcatgttaaccat |
501 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||||| ||||| || ||||| |||| |||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
26960162 |
gcctgtaacgaaacgccagctgatcctgcttcagagatgatagccactaacttcgtaccttccataaagagctttttttcattcatgttgaccat |
26960256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 686
Target Start/End: Original strand, 26960357 - 26960447
Alignment:
| Q |
596 |
caacttacgtattacgagcctgataagttacaccctttccagcagggcccctcacaagcatgcctctccttcctgtaatttctgcaacttt |
686 |
Q |
| |
|
||||||||| || |||| ||||||| |||||| ||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
26960357 |
caacttacgaatatcgagtctgataaaacacacccgttccactaggggccctcacaagcattcctttccttccagtaatttctgcaacttt |
26960447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University