View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_high_13 (Length: 338)
Name: NF10950_high_13
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 2350066 - 2349756
Alignment:
| Q |
17 |
tgttggtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccattacgtaaaagttttg |
116 |
Q |
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| T |
2350066 |
tgttggtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccattacgtaaaaattttg |
2349967 |
T |
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| Q |
117 |
tgttgtgcaacacagagtttgaaataaagatttatttattgtgaatggttatcttgctggtcaagaataataatattacacattcattcccatgcataag |
216 |
Q |
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| T |
2349966 |
tgttgtgcaacacagagtttgaaataaagatttatttattgtgaatggttatcttgctggccaagaataataatattacacattcattcccatgcataag |
2349867 |
T |
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| Q |
217 |
ggattttcctttattctagctatcaccaccagctcatgagttttagatagaattgtgaatcctcttattgttctcatttttggggtcacatgctcgacta |
316 |
Q |
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| T |
2349866 |
ggattttcctttattctagctatcaccaccagctcatgagttttagatagaattgtgaatcctcttattgttctcatttttggggtcacatgctcgacta |
2349767 |
T |
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| Q |
317 |
ctttcattcat |
327 |
Q |
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| T |
2349766 |
ctttcattcat |
2349756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 2329739 - 2329671
Alignment:
| Q |
44 |
tggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccattacgtaaaagt |
112 |
Q |
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| T |
2329739 |
tggctctgatgaggaagatgatgcagagagaaacaagtgcgatgaaccatgtttccattacgtaaaagt |
2329671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 2326059 - 2325965
Alignment:
| Q |
21 |
ggtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccattacgtaaaagtttt |
115 |
Q |
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| T |
2326059 |
ggtggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgtttccatcacgtaaaagtttt |
2325965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 2302474 - 2302411
Alignment:
| Q |
51 |
gatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccattacgtaaaagttt |
114 |
Q |
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| T |
2302474 |
gatgaggaagatgatgcagagagtaatgaggacaatgaaccatgtttccattgtgtaaaagttt |
2302411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 2292871 - 2292805
Alignment:
| Q |
35 |
aggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccat |
101 |
Q |
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| T |
2292871 |
aggagaggatggctctgataaggaagatgatgcaaagagtaacgaggacaatgaaccatggttccat |
2292805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 2309215 - 2309139
Alignment:
| Q |
22 |
gtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttc |
98 |
Q |
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| T |
2309215 |
gtggttgtgaagaaggagagcatggctctgataaggaagatgatgcagagagtaacgaggactatgaaccatgtttc |
2309139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 2320205 - 2320125
Alignment:
| Q |
21 |
ggtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtgcaatgaaccatgtttccat |
101 |
Q |
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| T |
2320205 |
ggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagcgtaacgaggacgatgaaccatgtttccat |
2320125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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