View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10950_high_16 (Length: 316)
Name: NF10950_high_16
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 34998732 - 34998573
Alignment:
| Q |
152 |
aaaccaaatccctttcctccttcaatcgcatataatcatcatcat---ttcatatcacggtatatataatattattgaaatgtgttcgcgtttcataccc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34998732 |
aaaccaaatccctttcctccttcaatcgcatataatcatcatcatcatttcatatcacggtatatataatattattgaaatgtgttcgcgtttcataccc |
34998633 |
T |
|
| Q |
249 |
ccaccccaatttcattcattaat---ataaacttgtctcaactcgattttgctttttcat |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34998632 |
ccaccccaatttcattcattaatataataaacttgtctcaactcgattttgctttttcat |
34998573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 34998872 - 34998787
Alignment:
| Q |
18 |
acgaaatgcactgaaataattaatagtgtaataagtttttccctgaggcgcaaagaaacgttgaaatcacatagaacggtagatcc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34998872 |
acgaaatgcactgaaataattaatagtgtaataagtttttccctgaggcgcaaagaaacgttgaaatcacatagaacggtagatcc |
34998787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 31607633 - 31607670
Alignment:
| Q |
47 |
aataagtttttccctgaggcgcaaagaaacgttgaaat |
84 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
31607633 |
aataagtttttctctgaggcgaaaagaaacgttgaaat |
31607670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University