View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_high_19 (Length: 269)
Name: NF10950_high_19
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 36373300 - 36373054
Alignment:
| Q |
18 |
atatgaaaccttatttaacgatgacgcggtaacaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtct |
117 |
Q |
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| T |
36373300 |
atatgaaaccttctttaacgatgacgcggtaacaaaccgggaaagatcagacaaaaacttcccgaaaagtagtcttgattgtggcaatgaagagcagtct |
36373201 |
T |
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| Q |
118 |
tcggatgaatcccacatataaagattaacttttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaattt |
217 |
Q |
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| T |
36373200 |
tcggatgaatcccacatataaagattaaattttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttggaggatgctaattt |
36373101 |
T |
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| Q |
218 |
gcttaataccaatcacactaacatctttcttcagagttcttctctct |
264 |
Q |
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| T |
36373100 |
gcttaataccaatcacactaacctctttcttcagagttcttatctct |
36373054 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 32252615 - 32252776
Alignment:
| Q |
49 |
acaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaactt |
148 |
Q |
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|||||||| ||||||||||| |||| ||||| ||||| ||| ||||||| ||||||||||| ||||| |||||||||||| ||||| | |||| || |
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| T |
32252615 |
acaaaccacgaaagatcagatgaaaatttcccaacaagtaatctagattgtgataatgaagagcaatcttctgatgaatcccacctataaggcttaattt |
32252714 |
T |
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| Q |
149 |
ttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatg |
210 |
Q |
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| T |
32252715 |
cagaggtatcattttcttttaacaagccttcacaagtattatgttgaagcctttggaggatg |
32252776 |
T |
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