View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_high_21 (Length: 262)
Name: NF10950_high_21
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 21528220 - 21527987
Alignment:
| Q |
18 |
atataccgttagttgaaaggaaatatcttaaacatcattatatggtgacaattgtacaatgtatttacattatatagactattccttatttctactttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21528220 |
atataccgttagttgaaaggaaatatcttaaacatcattatatggtgacaattgtacaatgtatttacattatatagactattccttattactactttcc |
21528121 |
T |
|
| Q |
118 |
aataatagagctacactaatggcttaaaatatgtcctgataaaactaagtaacaaatctgcagcaaggtacaaagaactaaaacttattcctaatttcat |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21528120 |
aataatagagctacactaatggcttaaaatctgtcctgataaaactaagtaacaaatctgcagcaaggtacaaagaactaaaacttattcctaatttcat |
21528021 |
T |
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| Q |
218 |
ggcatannnnnnnnncttttgttcttaatttcat |
251 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
21528020 |
ggcataattttttttcttttgttcttaatttcat |
21527987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 18071209 - 18071066
Alignment:
| Q |
18 |
atataccgttagttgaaaggaaatatcttaaacatcattatatggtgacaattgtacaatgtatttacattatatagactattccttatttctactttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18071209 |
atataccgttagttgaaaggaaatatcttaaatatcattctatggtgaaaattgtagaatgtatttacattatatagactattccttattactactttcc |
18071110 |
T |
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| Q |
118 |
aataatagagctacactaatggcttaaaatatgtcctgataaaa |
161 |
Q |
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| T |
18071109 |
aataatagagctacactaatggcttaaaatctgtcctgataaaa |
18071066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 12282068 - 12281872
Alignment:
| Q |
58 |
tatggtgacaattgtacaatgtatttacattatatagactattccttatttctactttccaataatagagctacactaatggcttaaaatatgtcctgat |
157 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| | | || |||||| |||||||||| |||||||| ||||||||| |
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| T |
12282068 |
tatggtgacaattgtacaatgtatttacattatatagattattccttattatgccatgagaa--atagagatacactaatgacttaaaatctgtcctgat |
12281971 |
T |
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| Q |
158 |
aaaa-----ctaagtaacaaatctgcagcaaggtacaaagaactaaaacttattcctaatttcatggcatannnnnnnnncttttgttcttaatttcat |
251 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12281970 |
aaaaggaaactaagtaacaaatctgcagcaaggtacaaagaactaaaacttattcctaatttcatggcataattttttttcttttgttcttaatttcat |
12281872 |
T |
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