View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_high_23 (Length: 260)
Name: NF10950_high_23
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 26629676 - 26629821
Alignment:
| Q |
98 |
gctataacttcaggggcaactttttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttcgagcagaacatgatgatcacttaaag |
197 |
Q |
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| T |
26629676 |
gctataacctcaggagcaactttaggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatgatggtcacttagag |
26629775 |
T |
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| Q |
198 |
ctttgtagcacgcagccagaacacgttcagtcacctcagcacactt |
243 |
Q |
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| T |
26629776 |
ccttgtaacatgctgcaagaacgcgttctgttacatcagcgcactt |
26629821 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 42028178 - 42028140
Alignment:
| Q |
208 |
cgcagccagaacacgttcagtcacctcagcacacttgtt |
246 |
Q |
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| T |
42028178 |
cgcagccagaacacgttcagtcacctcagcacacttgtt |
42028140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 29237180 - 29237331
Alignment:
| Q |
20 |
ctctgtccaccagacaagaacacaacagcaggaactgcagccggaacagttcgctgcaaggccttaacggtatattcagctataacttcaggggcaactt |
119 |
Q |
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| T |
29237180 |
ctctgtccaccagacaagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaacggtgtgctcagcaacaacctcgggtgcaacct |
29237279 |
T |
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| Q |
120 |
tttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttc |
171 |
Q |
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| T |
29237280 |
ttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttc |
29237331 |
T |
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