View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10950_high_25 (Length: 249)
Name: NF10950_high_25
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 19192119 - 19191882
Alignment:
| Q |
1 |
aagtatgttatgtttaacaccaaagtggtggaaatgaagtttgttcgagacaaagaaggttttgatttcggacgtctacccaatgaccatggaaatccac |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19192119 |
aagtatgttatgttcaacaccaaagtggtggaaatgaagtttgttcgggacaaagaaggttttgatttcggacgtctacccaatgaccatggaaatccac |
19192020 |
T |
|
| Q |
101 |
ttcctgatcgtccagtatgggagctttctgttcaaactaatgaatcagacgcaattcaggtctttattcacttcaaacttatcacttacggtactaaaca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19192019 |
ttcctggtcgtccagtatgggagctttctgttcaaactaatgaatcagacgcaattcaggtctttattcacttcaaacttatcacttacgatactaaaca |
19191920 |
T |
|
| Q |
201 |
agatttttgaaaaagattaagtttgcaatcgcaatctg |
238 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
19191919 |
agctttttgaaaaagattaagtttgcaatagcaatctg |
19191882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 19054675 - 19054847
Alignment:
| Q |
1 |
aagtatgttatgtttaacaccaaagtggtggaaatgaagtttgttcgagacaaagaaggttttgatttcggacgtctacccaatgaccatggaaatccac |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
19054675 |
aagtatgttaagttcaacaccaaagtggttgaaatcaagtttgttcgagacaaagaaggttttgattttggacgcctacctggtgaccatggaaatcctt |
19054774 |
T |
|
| Q |
101 |
ttcctgatcgtccagtatgggagctttctgttcaaactaatgaatcagacgcaattcaggtctttattcactt |
173 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19054775 |
tgcctgaacgaccagtgtgggagctttctgttcagactaatgaatcagatgccattcaggtctttattcactt |
19054847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 6898596 - 6898427
Alignment:
| Q |
1 |
aagtatgttatgtttaacaccaaagtggtggaaatgaagtttgttcgagacaaagaaggttttgatttcggacgtctacccaatgaccatggaaatccac |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||| |
|
|
| T |
6898596 |
aagtatgttatgtttaactacaaggtggtggaaatcaagtttgttcgagacaaagaaggttttgattttggatgcttacctcctgaccatggaaatccac |
6898497 |
T |
|
| Q |
101 |
ttcctgatcgtccagtatgggagctttctgttcaaactaatgaatcagacgcaattcaggtctttattca |
170 |
Q |
| |
|
|||||| |||| || |||||||||| |||||| |||||||||||| ||| |||||||| |||||||| |
|
|
| T |
6898496 |
ttcctggtcgtatggtgtgggagctttttgttcagactaatgaatcatacgtcattcaggtgtttattca |
6898427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 19179907 - 19179847
Alignment:
| Q |
8 |
ttatgtttaacaccaaagtggtggaaatgaagtttgttcgagacaaagaaggttttgattt |
68 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
19179907 |
ttatgttgaacaccaaagtggtggaaatgaagcttgttcgggacaaagagggttttgattt |
19179847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University