View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10950_high_27 (Length: 244)
Name: NF10950_high_27
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 23300163 - 23300395
Alignment:
| Q |
1 |
atggataaacatgggtatgcaagtttaaacatattcggatatgcgatactgaatatggttcaccaatttgggttaataaataataagaacaaaaagatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23300163 |
atggataaacatgggtatgcaagtttaaacatattcggatatgcgatactgaatatggttcaccaatttgggttgataaataataagaacaaaaagatat |
23300262 |
T |
|
| Q |
101 |
tgattttaggttcttgaatcagatgaagaataccaatcttggtgtgaatttttcattgttttcaagttcctatttatgactttctgtttgtattgtgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23300263 |
tgattttaggttcttgaatcagatgaagaataccaatcttggtgtgtatttttcattgttttcaagttcctatttatgactttctgtttgtattgtgagg |
23300362 |
T |
|
| Q |
201 |
cgctagcctagtgccatgatatgttctgtgctc |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
23300363 |
cgctagcctagtgccatgatatgttttgtgctc |
23300395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 24197796 - 24198023
Alignment:
| Q |
8 |
aacatgggtatgcaagtttaaacatattcggatatgcgatactgaatatggttcaccaatttgggttaataaataataagaacaaaaagatattgatttt |
107 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || || |||||||| |||||||| |
|
|
| T |
24197796 |
aacatgggaatgcaagtttaaatgaattcggatatgcgatactgaatatgattcaccaatctgggttaataaataagaaaaagaaaaagatgttgatttt |
24197895 |
T |
|
| Q |
108 |
aggttcttgaatcagatgaagaataccaatcttggtgtgaatttttcattgttttcaagttcctatttatgactttctgtttg----tattgtgaggcgc |
203 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||| |||| | |||||| || |||||| ||||||||||||| |
|
|
| T |
24197896 |
aggttcttcaataagatgaagaataccaatcttggtgtg-ttttttcactgttttcaggttcatgtttatggaattttgtttgtatatattgtgaggcgc |
24197994 |
T |
|
| Q |
204 |
tagcctagtgccatgatatgttctgtgct |
232 |
Q |
| |
|
||||||| ||||||| |||||| |||||| |
|
|
| T |
24197995 |
tagcctaatgccatggtatgttttgtgct |
24198023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 16911602 - 16911829
Alignment:
| Q |
8 |
aacatgggtatgcaagtttaaacatattcggatatgcgatactgaatatggttcaccaatttgggttaataaataataagaacaaaaagatattgatttt |
107 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| || || |||||||| |||||||| |
|
|
| T |
16911602 |
aacatgggaatgcaagtttaaatgaattaggaaatgcgatactgaatatgattcaccaatctgggttaataaataagaaaaagaaaaagatgttgatttt |
16911701 |
T |
|
| Q |
108 |
aggttcttgaatcagatgaagaataccaatcttggtgtgaatttttcattgttttcaagttcctatttatgactttctgtttg----tattgtgaggcgc |
203 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||| ||||||| |||||||| |||| | |||||| || |||||| ||||||||||||| |
|
|
| T |
16911702 |
aggttcttcaataagatgaagaataccaatattggtgtg-ttttttcactgttttcaggttcatgtttatggaattttgtttgtatatattgtgaggcgc |
16911800 |
T |
|
| Q |
204 |
tagcctagtgccatgatatgttctgtgct |
232 |
Q |
| |
|
||||||| ||||||| |||||| |||||| |
|
|
| T |
16911801 |
tagcctaatgccatggtatgttttgtgct |
16911829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University