View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_high_36 (Length: 229)
Name: NF10950_high_36
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 29280472 - 29280676
Alignment:
| Q |
10 |
agaagcagagaggagcatgcagatgacccttctgcaataagtaaaggcagagtgaaaggttacttgaatgtaacaagggcttttggggctgggtttctga |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280472 |
agaatcagaaaggagcatgcagatgacccttctgcaataagtaaaggcagagtgaaaggttacttgaatgtaacaagggcttttggggctgggtttctga |
29280571 |
T |
|
| Q |
110 |
agcaggtgannnnnnnataacattatattagactatgattatgtgcttaattgttcgttcaatccaacgtatgcatttcactaatccgaattgtatagct |
209 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29280572 |
agcaggtgatttttttataacattatattagactatgattatgtgcttaattgttcgttcaatccaacgtatgcatttcactaatccggattgtatagct |
29280671 |
T |
|
| Q |
210 |
atatg |
214 |
Q |
| |
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||||| |
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|
| T |
29280672 |
atatg |
29280676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 21969540 - 21969437
Alignment:
| Q |
10 |
agaagcagagaggagcatgcagatgacccttctgcaataagtaaaggcagagtgaaaggttacttgaatgtaacaagggcttttggggctgggtttctga |
109 |
Q |
| |
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|||| |||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||| ||||| |||||||||||||| || ||||| || | |
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| T |
21969540 |
agaatcagacaggagcatccggatgatccatctgcaataacgaaaggacgagtgaaaggttacttaaatgtcacaagggcttttggagcagggttcctta |
21969441 |
T |
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| Q |
110 |
agca |
113 |
Q |
| |
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|||| |
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|
| T |
21969440 |
agca |
21969437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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