View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_12 (Length: 344)
Name: NF10950_low_12
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_12 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 41544073 - 41544392
Alignment:
| Q |
1 |
caaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattcttttaatttatt |
100 |
Q |
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| T |
41544073 |
caaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattctttta-----tt |
41544167 |
T |
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| Q |
101 |
actactcacaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaattttgtttgca |
200 |
Q |
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| T |
41544168 |
actactcaaaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaattttgtttgca |
41544267 |
T |
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| Q |
201 |
ggtttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagagggaacatttcagatgaagaagaggatttga |
300 |
Q |
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| T |
41544268 |
ggtttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagagggaacatttcagatgaagaagaggatttga |
41544367 |
T |
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| Q |
301 |
ttattaggcttcacaaacttcttgg |
325 |
Q |
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| T |
41544368 |
ttattaggcttcacaaacttcttgg |
41544392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 37807865 - 37807947
Alignment:
| Q |
191 |
tttgtttgcaggt-ttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagaggga |
273 |
Q |
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| T |
37807865 |
tttgtttgcaggtcttgaa-aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagaggga |
37807947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 2792089 - 2792051
Alignment:
| Q |
199 |
caggtttgaataggtgtggaaagagttgcaggctaagat |
237 |
Q |
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| T |
2792089 |
cagggttgaataggtgtggtaagagttgcaggctaagat |
2792051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 5600 - 5567
Alignment:
| Q |
217 |
gaaagagttgcaggctaagatggttgaactatct |
250 |
Q |
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| T |
5600 |
gaaagagttgtaggctaagatggttgaactatct |
5567 |
T |
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