View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_17 (Length: 290)
Name: NF10950_low_17
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 36292175 - 36292444
Alignment:
| Q |
18 |
tttttgttgttcttatatacaagaataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggt |
117 |
Q |
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| T |
36292175 |
tttttgttgttcttatatacaagaataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatcttaacaacattacagaagggt |
36292274 |
T |
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| Q |
118 |
gtgtagctcgtattgctgctaagctagaatacttgcaatcctgctgcagtgtcaaagataggcatggaattctattatttcacaaactaaaactgttttg |
217 |
Q |
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| T |
36292275 |
gtgtagctcgtattgctgctaagctagaatacttgcaatcctgctgcagtgtcaaagataggcatggaattctattatttcacaaactaaaactgttttg |
36292374 |
T |
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| Q |
218 |
aaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgttcttctcactc |
287 |
Q |
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| T |
36292375 |
aaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgtttttcgcactc |
36292444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 41 - 286
Target Start/End: Original strand, 36280725 - 36280971
Alignment:
| Q |
41 |
aataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaag |
140 |
Q |
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| T |
36280725 |
aataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatctaaacaacataacagaaggatgtgtagctcgtattgctgctaag |
36280824 |
T |
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| Q |
141 |
ctagaatacttgcaatcctgctgcagtgtcaaagataggcatg-gaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattc |
239 |
Q |
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| T |
36280825 |
ctagaatacttgcaatcctgctgtagtgttaaagataggtatgtaaatggaataatttcacaaacttgaactgttttaatattgttaggttttaagattc |
36280924 |
T |
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| Q |
240 |
ttaataagaaattaagaatttgtattgataatcttgttcttctcact |
286 |
Q |
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| T |
36280925 |
ttagtaagaaattaagaatttgtaatgataatattgtttttctcact |
36280971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 41 - 285
Target Start/End: Original strand, 36286227 - 36286472
Alignment:
| Q |
41 |
aataattttgttgttt--ttcattgtgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgcta |
138 |
Q |
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| T |
36286227 |
aataattttgttgtttggttgattgtgaagttaatagggaacacaccattggtatatctaaacaacattacagaagggtgtgtagctcgtattgctgcta |
36286326 |
T |
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| Q |
139 |
agctagaatacttgcaatcctgctgcagtgtcaaagataggcatggaattcta------ttatttcacaaactaaaactgttttgaaattgttaagtttt |
232 |
Q |
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| T |
36286327 |
agctagagtacttgcaatcttgctgcagtgtcaaagataggcatggaattcgaattcgtctatttcacaaactagagctgtatttaaattgtaaggtttt |
36286426 |
T |
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| Q |
233 |
aagattcttaataagaaattaagaatttgtattgataatcttgttcttctcac |
285 |
Q |
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| T |
36286427 |
aagactttt-------aattaagaatttgtagtgataatcttttttttctcac |
36286472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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