View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_18 (Length: 279)
Name: NF10950_low_18
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 27976442 - 27976692
Alignment:
| Q |
17 |
cacatatatatttaaaacttttgtactccaactaattttatttttgtttgtgcagttaagagaaatgaagaatgctcttgtgacaatggacaaagagata |
116 |
Q |
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| T |
27976442 |
cacatatatatttaaaacttttgtactccaactaattttatttttgtttgtgcagttaagagaaatgaagaatgctcttgtgacaagggacaaagagata |
27976541 |
T |
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| Q |
117 |
caatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaaccacataatacaaatatacaccacatgaaggacttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
27976542 |
caatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaaccacagaatacaaatatacaccacatgaagcacttt |
27976641 |
T |
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| Q |
217 |
ttagaaaatcaggtcaaggatccaacatgcaggaggatactgatacttcatctc |
270 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27976642 |
ttagaaaatcaggtcaaggatccaacatgc---aggatactgatacttcatctc |
27976692 |
T |
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