View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_3 (Length: 516)
Name: NF10950_low_3
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 500
Target Start/End: Original strand, 41218446 - 41218943
Alignment:
| Q |
3 |
cagagaaagtagagaacttctaaagcctagccattaataagctagcttatagcataaatgggagtcctatttttcatctctagtaacaagtataactatg |
102 |
Q |
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| T |
41218446 |
cagagaaagtagagaacttctaaagcctagccattaataagctagcttatagcataaatgggagtcctatttttcatctctagtaacaagtataactatg |
41218545 |
T |
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| Q |
103 |
agtcgaagtaacagaatctcagacagtagtttctaattgacttttgttatttacttttgcagtgataatttcattaattcatatcaagaatgaatgcaat |
202 |
Q |
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| T |
41218546 |
agtcgaagtaacagaatctcagacagtagtttctaattgacttttgttatttacttttgcagtgataatttcattaattcatatcaagaatgaatgcaat |
41218645 |
T |
|
| Q |
203 |
ttccatcatatatatactaaagaaaacactgcacgataacatgatctagcagaaaaacaatttatatttggcttattgtaaagaaacagttgaatgatta |
302 |
Q |
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| T |
41218646 |
ttccatcatatatatactaaagaaaacactgcacgataacatgatctagcagaaaaacaatttatatttggcttattgtaaagaaacagttgaatgatta |
41218745 |
T |
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| Q |
303 |
ggaaaaactattagcatcctagaatcttataaagcaaatttatccnnnnnnnatataccactatgttcctcttgctactgactaaagagacatactagaa |
402 |
Q |
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| T |
41218746 |
agaaaaactattagcatcctagaatcttataaaccaaatttatcctttttttatataccactatgttcctcttgctactgactaaagagacatactagaa |
41218845 |
T |
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| Q |
403 |
actgacgtaaacatgaaattgaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttctcctccatttagatat |
500 |
Q |
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| T |
41218846 |
actgacgtaaacatgaaattgaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtcttttgtttctcctccatttagatat |
41218943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 485
Target Start/End: Original strand, 41224398 - 41224517
Alignment:
| Q |
360 |
ccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattg-aactcacagtgttcttgttttctgatatcattctc |
458 |
Q |
| |
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||||| |||| |||| ||||||||| |||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||| |
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| T |
41224398 |
ccactgtgtttctctggctactgacaaaagagacatactagaaactgatgt-aacatgaaattgttactcacag------cgttttctgatatcattctt |
41224490 |
T |
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| Q |
459 |
tcagtagaaagatagtctcttgtttct |
485 |
Q |
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| T |
41224491 |
tcagtaggaagatagtctcttgcttct |
41224517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 500
Target Start/End: Original strand, 41226040 - 41226102
Alignment:
| Q |
438 |
ttgttttctgatatcattctctcagtagaaagatagtctcttgtttctcctccatttagatat |
500 |
Q |
| |
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| T |
41226040 |
ttgttttctgatatgattctttgagtaggaagatagtctcctgtttctcctccatttagatat |
41226102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 347
Target Start/End: Original strand, 41224157 - 41224327
Alignment:
| Q |
175 |
attaattcatatcaagaatgaatgcaatttccatcatatatatactaaagaaaacactgcacgataacatgatctagcagaaaaacaatttatatttggc |
274 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| | || ||| ||| || ||| ||||| | || |||| ||| |||| |||||||||| |
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| T |
41224157 |
attatttcatatcaagaatgaatgtaatttccatcatataca--ctgaagcaaaaacaacaccataacctaataatgcagcaaa-caatatatatttggc |
41224253 |
T |
|
| Q |
275 |
ttattgtaaagaaacagttgaatgattaggaaaaactatta-gcatcctagaatcttataaagcaaatttatcc |
347 |
Q |
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| T |
41224254 |
ttattgcaaggaaacagctgaataagtaagaaaaacttttatgcttcatacaatcttataaaccaaatttatcc |
41224327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 41224023 - 41224069
Alignment:
| Q |
41 |
aagctagcttatagcataaatgggagtcctatttttcatctctagta |
87 |
Q |
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| T |
41224023 |
aagctagcttatagcataaatgggaatcccatttttcatttctagta |
41224069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 485
Target Start/End: Complemental strand, 555005 - 554881
Alignment:
| Q |
360 |
ccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattg-aactcacagtgttcttgttttctgatatcattctc |
458 |
Q |
| |
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|||| ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
555005 |
ccacaatgttcctcctcttaccgactaaagagacatactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctc |
554908 |
T |
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| Q |
459 |
tcagtagaaagatagtctcttgtttct |
485 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
554907 |
tcagtaggaagatagtctcttgtttct |
554881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 1596993 - 1596908
Alignment:
| Q |
401 |
aaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttct |
485 |
Q |
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| T |
1596993 |
aaactgatctaaacatgaaattagaactcacagtgtttttgttttctgatatcattctgtcagtaggaaggtagtctcttgtttct |
1596908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 1597799 - 1597707
Alignment:
| Q |
394 |
atactagaaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttct |
485 |
Q |
| |
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|||||||||||||| || ||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
1597799 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttct |
1597707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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