View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_30 (Length: 240)
Name: NF10950_low_30
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 7278602 - 7278783
Alignment:
| Q |
1 |
tcttccataaagcttccactttgttaccttcctcatattcaccatccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgccacc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7278602 |
tcttccataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctacc |
7278701 |
T |
|
| Q |
101 |
atcctcattcatcaaagatcccattttttcaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
182 |
Q |
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| T |
7278702 |
atcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattc |
7278783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7375237 - 7375056
Alignment:
| Q |
1 |
tcttccataaagcttccactttgttaccttcctcatattcaccatccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgccacc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7375237 |
tcttccataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctacc |
7375138 |
T |
|
| Q |
101 |
atcctcattcatcaaagatcccattttttcaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
182 |
Q |
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| T |
7375137 |
atcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattc |
7375056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 7278788 - 7278921
Alignment:
| Q |
97 |
caccatcctcattcatcaaagatcccattttttcaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaac |
196 |
Q |
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||||||||||||||| ||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278788 |
caccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaac |
7278887 |
T |
|
| Q |
197 |
acacttaccttcaccgccttcaacttcctctgtg |
230 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7278888 |
acacttaccttcaccgccttcaacttcctctgtg |
7278921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 7375049 - 7374918
Alignment:
| Q |
99 |
ccatcctcattcatcaaagatcccattttttcaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacac |
198 |
Q |
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||||||||||||| ||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375049 |
ccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacac |
7374950 |
T |
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| Q |
199 |
acttaccttcaccgccttcaacttcctctgtg |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
7374949 |
acttaccttcaccgccttcaacttcctctgtg |
7374918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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