View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10950_low_36 (Length: 238)

Name: NF10950_low_36
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10950_low_36
NF10950_low_36
[»] chr3 (2 HSPs)
chr3 (64-127)||(8371435-8371498)
chr3 (175-222)||(8371537-8371584)
[»] chr4 (4 HSPs)
chr4 (64-127)||(11094739-11094802)
chr4 (64-127)||(52980199-52980262)
chr4 (64-127)||(39592128-39592190)
chr4 (64-126)||(29687817-29687879)
[»] chr8 (4 HSPs)
chr8 (64-127)||(7486292-7486355)
chr8 (65-120)||(117263-117318)
chr8 (64-127)||(13363416-13363479)
chr8 (1-31)||(39546611-39546641)
[»] chr1 (3 HSPs)
chr1 (64-127)||(30551427-30551490)
chr1 (64-127)||(23081964-23082027)
chr1 (64-127)||(37624408-37624471)
[»] chr7 (3 HSPs)
chr7 (64-114)||(38406232-38406282)
chr7 (64-107)||(18801430-18801473)
chr7 (64-101)||(19848698-19848735)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 8371435 - 8371498
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8371435 aaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaata 8371498  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 8371537 - 8371584
Alignment:
Q  175 ctaacccagaaaatcaatcctattttgctttctttcatcatcattatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8371537 ctaacccagaaaatcaatcctattttgctttctttcatcatcattatc 8371584  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 11094739 - 11094802
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||| ||||||| |||||||||||    
T  11094739 aaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaata 11094802  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 52980199 - 52980262
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    |||||||||||||||||| || || ||||||||||||| ||||| ||||||| |||||||||||    
T  52980199 aaaagaggattgttggattatgtagagtctattgtattttattgtaaaccaccaacacctaata 52980262  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 39592190 - 39592128
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||||||||||||||||||| ||  ||||||| |||| ||||| ||||||| |||||||||||    
T  39592190 aaaagaggattgttggatcatgtag-gtctattatattttattgtaaaccaccaacacctaata 39592128  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 29687879 - 29687817
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaat 126  Q
    ||||||| ||||||||||||| ||  |||||||||||| |||||  |||||||| ||||||||    
T  29687879 aaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaat 29687817  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 7486292 - 7486355
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    |||||||||||||| |||||||||   ||||||||||| ||||| ||||||| |||||||||||    
T  7486292 aaaagaggattgttagatcatataagatctattgtattttattgtaaaccaccaacacctaata 7486355  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 117263 - 117318
Alignment:
Q  65 aaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaaca 120  Q
    |||||||||||||||||||||||   ||||||||||| ||||| ||||||| ||||    
T  117263 aaagaggattgttggatcatataggatctattgtattttattgtaaaccaccaaca 117318  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 13363479 - 13363416
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||||||||||||||||||| ||  |||||||||||| |  ||  ||||||||||||||||||    
T  13363479 aaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaata 13363416  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 39546641 - 39546611
Alignment:
Q  1 ttaaaggtggtccaccatggaccttagtaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  39546641 ttaaaggtggtccaccatggaccttagtaaa 39546611  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 30551490 - 30551427
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||||||||||||||||||| ||  |||||||||||| || ||  ||||||||||||||||||    
T  30551490 aaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 30551427  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 23082027 - 23081964
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||| |||||||||||| || ||  |||||||||||| || || |||||||||||||||||||    
T  23082027 aaaagtggattgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaata 23081964  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 37624471 - 37624408
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaaccactaacacctaata 127  Q
    ||||||||||||||| ||||| ||  |||||||||||| || ||  ||||||||||||||||||    
T  37624471 aaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 37624408  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 38406232 - 38406282
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattgcaaacca 114  Q
    ||||||||||||||||||||| || ||||||||||||| ||||| ||||||    
T  38406232 aaaagaggattgttggatcatttaaagtctattgtattttattgtaaacca 38406282  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 18801430 - 18801473
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtattctattg 107  Q
    ||||||||||||||||||||| || ||||||||||||| |||||    
T  18801430 aaaagaggattgttggatcatgtagagtctattgtattttattg 18801473  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 19848735 - 19848698
Alignment:
Q  64 aaaagaggattgttggatcatatatagtctattgtatt 101  Q
    ||||||||||||||||||||| || |||||||||||||    
T  19848735 aaaagaggattgttggatcatgtagagtctattgtatt 19848698  T

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