View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_38 (Length: 229)
Name: NF10950_low_38
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 19192326 - 19192106
Alignment:
| Q |
5 |
cactacaaccctattgtttttgaagccactaactccattggtggtgtttggagacattgttcctataggtgtactaaacttcaatcacaaacatggaatt |
104 |
Q |
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| T |
19192326 |
cactacaaccctattgtttttgaagccactaactccattggtggtgtttggagacattgttcctataggtgtactaaacttcaatcacaaacatggaatt |
19192227 |
T |
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| Q |
105 |
atgaatttagtgattttccttggcctaaaagagagagtattgattacccttctcatgctgagattttggaatacttgcatacttatgttgttcattttga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19192226 |
atgaatttagtgattttccttggcctaaaagagagagtattgattacccttctcatgctgagattttggaatacttgcatacttatgttgttcattttga |
19192127 |
T |
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| Q |
205 |
tttattcaagtatgttatgtt |
225 |
Q |
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||||||||||||||||||||| |
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| T |
19192126 |
tttattcaagtatgttatgtt |
19192106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 19054468 - 19054684
Alignment:
| Q |
5 |
cactacaaccctattgtttttgaagccactaactccattggtggtgtttggagacattgttcctataggtgtactaaacttcaatcacaaacatggaatt |
104 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19054468 |
cactacaaccctattgtttttgaagccactgattcaattggtggtgtttggagacattgttcctataggtgtactaagcttcaatcacaaacatggaatt |
19054567 |
T |
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| Q |
105 |
atgaatttagtgattttccttggcctaaaagagagagtattgattacccttctcatgctgagattttggaatacttgcatacttatgttgttcattttga |
204 |
Q |
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| T |
19054568 |
atgaatttagtgatttcccttggcctgaaagagaaagtaaagattacccttctcatgctgagattttggaatacttgcatctttatgccgtttattttga |
19054667 |
T |
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| Q |
205 |
tttattcaagtatgtta |
221 |
Q |
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||| || |||||||||| |
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| T |
19054668 |
tttgtttaagtatgtta |
19054684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 6898803 - 6898579
Alignment:
| Q |
5 |
cactacaaccctattgtttttgaagccactaactccattggtggtgtttggagacattgttcctataggtgtactaaacttcaatcacaaacatggaatt |
104 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || ||||| |||||||||||||||||||||| | |||||||| |||||||||| |||||| |||| |
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| T |
6898803 |
cactataacccaattgtttttgaagccactgattcaattgggggtgtttggagacattgttcctcaaaatgtactaagcttcaatcaccaacatgtaatt |
6898704 |
T |
|
| Q |
105 |
atgaatttagtgattttccttggcctaaaagagagagtattgattacccttctcatgctgagattttggaatacttgcatacttatgttgttcattttga |
204 |
Q |
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||||||| |||||||| ||||||||| |||| || ||| ||| | |||||| ||| |||||||||||||||||| | | |||||| ||| ||||||| |
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| T |
6898703 |
atgaattcagtgatttcccttggcctgaaagggaaagttctgaacatccttcttatgttgagattttggaatacttacgtgcttatgccgtttattttga |
6898604 |
T |
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| Q |
205 |
tttattcaagtatgttatgtttaac |
229 |
Q |
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||| ||||||||||||||||||||| |
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| T |
6898603 |
tttgttcaagtatgttatgtttaac |
6898579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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