View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_40 (Length: 205)
Name: NF10950_low_40
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 866404 - 866575
Alignment:
| Q |
16 |
aagaaaatgcctttcactttcaaaattttagctaaacataannnnnnnnnnnctttacagatgttcagatgaaaagaatccaagagtgaaaccttataaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866404 |
aagaaaatgcctttcactttcaaaattttagctaaacattatattatttct--tttgcagatgttcagatgaaaagaatccaagagtgaaaccttataaa |
866501 |
T |
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| Q |
116 |
ttctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaatgtttatatgacactgttag |
189 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
866502 |
ttttcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaagcaatgtttatatgacactgttag |
866575 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 45243806 - 45243909
Alignment:
| Q |
77 |
tgttcagatgaaaagaatccaagagtgaaaccttataaattctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaatgtttat |
176 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||||| |||| ||||| || |||||||||||||| ||||| |||| ||||||||| |
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| T |
45243806 |
tgttcagatgaaaagaatcctcgagtgaaaccacatatcttctcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttat |
45243905 |
T |
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| Q |
177 |
atga |
180 |
Q |
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|||| |
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| T |
45243906 |
atga |
45243909 |
T |
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