View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10950_low_6 (Length: 388)
Name: NF10950_low_6
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 41474941 - 41475333
Alignment:
| Q |
1 |
tgtttgaatttccacgtgtcatgtgataattagtgtatagtatgtacaatactataagaactgcatatagatatgaatgaatatttgtgtatccttagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41474941 |
tgtttgaatttccacgtgtcatgtgataattagtgtatagtatgtacaatactataagaactgcatatagatatgaatgaatatttgtgtatccttagtg |
41475040 |
T |
|
| Q |
101 |
aagaagtacccaggtgaggtcacgtttatttcctccgcgttgcgcagaatttctcgtttacctgtaaaactcaacaacaaa-----tccttcaccaaatt |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41475041 |
aagaagtacccaggtgagttcacgtttatttcctctgcgttgcgcagaatttctcgtttacctgtaaaactcaacaacaaatcaaatccttcaccaaatt |
41475140 |
T |
|
| Q |
196 |
caaaaaccctcttttttctaattcatcacgcaaacgacaccgtttcatcattttctagtgtcagtttttatttattacctaaaccagaaaattttctttt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41475141 |
caaaaaccctcttttttctaattcatcacgcaaacgacaccgtttcatcattttctagtgtcagtttttatttattacctaaaccagaaaattttctttt |
41475240 |
T |
|
| Q |
296 |
cacacattcataaatcattctcatttccatttcgagaaaattttgttagggtttcgttttcttcatcttctcacacattctcgcggtttttct |
388 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41475241 |
cacacattcataaatcattttcatttccatttcgagaaaattttgttagggtttcgttttcttcatcttctcacacattctctcgttttttct |
41475333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University