View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_7 (Length: 383)
Name: NF10950_low_7
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 47729278 - 47729629
Alignment:
| Q |
13 |
agatgaaggtagctatgtctcacaggaagagttgaataactcatagctgcatgaagaataattgcaaatatgaaggaagaaaccacattgaaatcaagtg |
112 |
Q |
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| T |
47729278 |
agatgaaggtagctatgtctcacaggaagagttgaataactcatagctgcatgaagaataattgcaaatatgaaggaagaaacaacattgaaaccaagtg |
47729377 |
T |
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| Q |
113 |
cgcggaatcctacaaaatcatgaaaataagaaggaaattaaggnnnnnnnnnnn---agcatttagatgaagtttattttacacaacaccaattatgcaa |
209 |
Q |
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| T |
47729378 |
cgcggaatcctacaaaatcatgaaaataagaaggaaattaaggtatattttttttttagcatttagatgaagtttattttacaca-caccaattatgcaa |
47729476 |
T |
|
| Q |
210 |
aaaaggaagataaatagtggtacctttgaatgtctcccatgggtagataataccatcattgtcaatgtcgaagaaggatgcatgttgttgaagcacagac |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47729477 |
aaaatgaagataaatagtggtacctttgaatgtctcccatgggtagataataccatcattgtcaatgtcgaagaaggctgcatgttgttgaagcacagac |
47729576 |
T |
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| Q |
310 |
atgtcattatgcttgtggccccatgtgccattcacattctctgcatcaggggc |
362 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47729577 |
atgtcattatgcctgtggccccatgtgccattcacattctctgcatcaggggc |
47729629 |
T |
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