View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10950_low_8 (Length: 380)
Name: NF10950_low_8
Description: NF10950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10950_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 42837394 - 42837044
Alignment:
| Q |
17 |
tcaagctccaccaaagagcttctgatagataccgacaggtaggtacctttctgataggttcaaagtaggtgtggtgttagtatcagttgttatcgaattt |
116 |
Q |
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| T |
42837394 |
tcaagctccaccaaagagcttctgatagataccgacaggtaggtacctttctgataggttcaaagtaggtgtggtgttagtatcagttgttatcgaattt |
42837295 |
T |
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| Q |
117 |
gttgccatgtttaaatcttatcaattatgcaagtaaatagataatctgtcatcgcaagagccattggtagatagtattttctcataccctttaattgtat |
216 |
Q |
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| T |
42837294 |
gttgccatgtttaaatcttatcaattatgcaagtaaatagataatctgtcatcgcaagagccattggtagatagtattttctcataccctttaattgtat |
42837195 |
T |
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| Q |
217 |
acctgtccatgtaaatgtatctatctaagcatatatacctgatttgatttatacctgtctactttgaagaagagatgacataggcacatagatttctgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837194 |
acctgtccatgtaaatgtatctatctaagcatatatacctgatttgatttgtacctgtctactttgaagaagagatgacataggcacatagatttctgat |
42837095 |
T |
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| Q |
317 |
tcagcctagctggctgttttaaaagaatttatatcttttcattttcctcct |
367 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42837094 |
tcagcctagctggctgttttaaaaggatttatatcttttcattttcctcct |
42837044 |
T |
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