View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_high_10 (Length: 371)
Name: NF10951_high_10
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 34436191 - 34435821
Alignment:
| Q |
1 |
tttccaagctgagcttgtctttgccaagatgggcatcaagtaagttacttccatttccgaaatcgaaactcttttttggaacaattaattgttggcacaa |
100 |
Q |
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| T |
34436191 |
tttccaagctgagcttgtctttgccaagatgggcatcaagtaagttacttccatttccgaaatcgaaactcttttttggaacaattaattgttggcacaa |
34436092 |
T |
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| Q |
101 |
ctaactagagcttaagttcaaccaagaaataatcatagcttcaaatcaaggttctgtaaaacggttttgtaaccacggctatagttgcaacgtcaagatt |
200 |
Q |
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| T |
34436091 |
ctaactagagcttatgttcaaccaagaaaaaatcatagcttcaaatcaaggttctgtaaaacggttttgtaaccgcggttatagttgcaacgtcaagatt |
34435992 |
T |
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| Q |
201 |
ttttatctctcaacaaccgtatgaaaatcgcaattacagttacatcaattctattcgaccacaatatttcgcaattgcagtgcgactgatttaaaacatt |
300 |
Q |
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| T |
34435991 |
ttttatctctcaacaaccgtatgaaaatcgcaattacagttacatcaattctattcgaccacaatatttcgcaattgcagtgcgactgatttaaaacatt |
34435892 |
T |
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| Q |
301 |
tgttcatatgcattaaactattgatgtgtgatgtcatctatgaagcatgaacacagacacacgcaccagac |
371 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34435891 |
tgttcatatgcattaaactattgatgtgtgatgttatctatgaagcatgaacacagacacacgcaccagac |
34435821 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30666511 - 30666466
Alignment:
| Q |
1 |
tttccaagctgagcttgtctttgccaagatgggcatcaagtaagtt |
46 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
30666511 |
tttccaagctgagcttgtctttgctaagatgggaatcaagtgagtt |
30666466 |
T |
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