View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_high_16 (Length: 319)
Name: NF10951_high_16
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34432000 - 34432312
Alignment:
| Q |
1 |
ccatctccaacaacattattactactattacttcctttgttcttgcactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttg |
100 |
Q |
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| T |
34432000 |
ccatctccaacaacattattaccactattacttcctttgttcttacactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttg |
34432099 |
T |
|
| Q |
101 |
aaaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432100 |
aaaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttag |
34432199 |
T |
|
| Q |
201 |
atcaccaagaagtaacacaacctcttgatcacaaaccactgctacatagtactctgaagttggttctgtttcaccattgaattttgcagatttaaggtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432200 |
atcaccaagaagtaacacaacctcttgatcacaaaccactgctacatagtactctgaagttggttctgtttcaccattgaattttgcagatttaaggtcc |
34432299 |
T |
|
| Q |
301 |
caaaagacatcaa |
313 |
Q |
| |
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||||||||||||| |
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| T |
34432300 |
caaaagacatcaa |
34432312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 43402978 - 43403228
Alignment:
| Q |
52 |
atagaaatctcatgacacctacctttctcatgaaacttagctttagttgaaaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggat |
151 |
Q |
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|||||||||||||| || |||| |||||||||||||||||| | ||||| || ||| ||||||||||||| || || || || ||||| | || |||| |
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| T |
43402978 |
atagaaatctcatgccatttacccttctcatgaaacttagctctggttgagaatttcttcttaccaaatatatgctctttctttgaaaccaatataggat |
43403077 |
T |
|
| Q |
152 |
caatgagtgatggtctacatccagttcttctgtaagcttctttctttagatcaccaagaagtaacacaacctcttgatcacaaaccactgctacatagta |
251 |
Q |
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|||| || | ||||||||| || |||||||| ||||| ||||| || |||||||||||||| | |||||||||| ||||||||| || ||||||||||| |
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| T |
43403078 |
caataagagctggtctacaacctgttcttctataagcatcttttttaagatcaccaagaagaagaacaacctcttcatcacaaacaacagctacatagta |
43403177 |
T |
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| Q |
252 |
ctctgaagttggttctgtttcaccattgaattttgcagatttaaggtccca |
302 |
Q |
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|||||||||||||||||||| || |||||||| |||| |||||||||||| |
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| T |
43403178 |
ttctgaagttggttctgtttctccgttgaatttagcagctttaaggtccca |
43403228 |
T |
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